PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G268900.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 709aa MW: 77531.1 Da PI: 4.5248 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 147.2 | 8.7e-46 | 10 | 135 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 ppGfrF+Ptdeelv ++Lk+++ + + + +++vd+yk++P++Lp+ ++++++++w+fFs++d+ky++g+r++r+t +gyWkatgkd+ Sevir.2G268900.2.p 10 PPGFRFSPTDEELVLYFLKRRIVSARPSP--YVADVDVYKSHPSHLPErsALQTGDRQWFFFSRTDRKYPNGSRASRTTGDGYWKATGKDR 98 8********************99988555..69*************94357888999********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +g++vg kktLv+++grap+ge+tdWvmhey+l Sevir.2G268900.2.p 99 FICG-GGRAVGNKKTLVYHHGRAPRGERTDWVMHEYTL 135 ***9.99*****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-52 | 7 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.735 | 9 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-24 | 10 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 709 aa Download sequence Send to blast |
METPPPRRWP PGFRFSPTDE ELVLYFLKRR IVSARPSPYV ADVDVYKSHP SHLPERSALQ 60 TGDRQWFFFS RTDRKYPNGS RASRTTGDGY WKATGKDRFI CGGGRAVGNK KTLVYHHGRA 120 PRGERTDWVM HEYTLLADAL PPAAQGRESY ALYKLFQKSG AGPKNGEQYG APFREEDWLD 180 DDEEGVTADA SANSVPNTNN CPATVEEHAI ADRELPIEDL HELLSQIGND QEEFGEAPLD 240 FSTPATSHGQ GQGWPSGGGD KAEVVDASVS DGAVVVAENT CIDLPLGDIE QLLMQISDDQ 300 QNAEFFSDFT PSVPQLQLQC DNHQVWLDAH RGQEVCAADP TASGGAVVAA ECTDTDLEGL 360 LLQIASDQDM VEPLSDLSPP IPHHNFNQVG IGDFHESHGA PVGNLSCTVQ ESTFVPQTEL 420 RSQFPQSNLT NVPFSGETNS SEGTSVPHSV SGLISYNSQD ADDEFLEIND FFDLEDVEQS 480 ANCTATEHLI SATNGMFDNL EYSDAPTFLP GPFDTAGEVA ENQFFDFGSS GIQNQGFHYT 540 TQVRTQNQAA LNVRSHMKDN HVVLSSHTSG TLNLHAANEP PSRSSTASQS WFNAALSTLL 600 DSVPSSPALA AEIENTVINR TLQRISSFRS HQASGEENTV INRTLQRISS FRSQQAVREE 660 PSTRRIQVTR GGRLTFISLL VILAAVMWTF TAGSALNFCK GLWKSSSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-43 | 10 | 135 | 16 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G268900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004957233.1 | 0.0 | uncharacterized protein LOC101780745 isoform X3 | ||||
TrEMBL | K3ZR58 | 0.0 | K3ZR58_SETIT; Uncharacterized protein | ||||
STRING | Si029088m | 0.0 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34180.1 | 2e-70 | NAC domain containing protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G268900.2.p |