PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G238700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HSF
Protein Properties Length: 403aa    MW: 42349.6 Da    PI: 8.5087
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G238700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.94.5e-35281212103
                         HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
        HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 
                         Fl+k+y++++d+++++++sw  ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv  e+         weF+++ F+kg+k
  Sevir.2G238700.1.p  28 FLTKTYQLVDDPATDHIVSWGdDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKGEK 109
                         9********************6667*****************************************999.........************* PP

                         XXXXXXXXXXXX CS
        HSF_DNA-bind  92 ellekikrkkse 103
                         +ll++i+r+k++
  Sevir.2G238700.1.p 110 QLLCEIHRRKTS 121
                         *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-3617113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.9E-5824118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.44E-3125118IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.9E-192851IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.9E-3028118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MERMERCGSW ECDAAAQAAA QKAVPAPFLT KTYQLVDDPA TDHIVSWGDD RVSTFVVWRP  60
PEFARDILPN YFKHNNFSSF VRQLNTYGFR KVVPERWEFA NEFFRKGEKQ LLCEIHRRKT  120
SASTASPSPP PFFAPPHFPL FHPGAPHHHP FVGGDDGVAV AAAHGMGVAF PHPHWREPHA  180
AAPVATRLLA LGAPPAPSPL LPTEGAGGAG SGRAATAAVL MEENERLRRS NTALLQELAH  240
MRKLYNDIIY FVQNHVRPVA PSPAAAAFLQ GLGLQARSKK PATPAVAAGL NNSGGSTTSS  300
SSLTIAEEPS PPPQHADKSG GGGEAGSSGT ARSAAAAAPT MLFGVRLSAD TSGAGTKRPA  360
SPEEVDEPAT SHARKPRLAL EGADLSLSVA APSAASSPAS TS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-221912312125Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G238700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3560021e-170AK356002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1028L19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004957003.10.0heat stress transcription factor B-4c
SwissprotQ67U941e-152HFB4C_ORYSJ; Heat stress transcription factor B-4c
TrEMBLK3ZTX50.0K3ZTX5_SETIT; Uncharacterized protein
STRINGSi030056m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.13e-57heat shock transcription factor B4