PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G224500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 398aa    MW: 42715.2 Da    PI: 4.4653
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G224500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19132181255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a ++k++g
  Sevir.2G224500.1.p 132 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 181
                         69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.17E-32132190No hitNo description
SMARTSM003809.0E-38132195IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-22132190IPR016177DNA-binding domain
PROSITE profilePS5103223.933132189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-32132191IPR001471AP2/ERF domain
PfamPF008476.7E-12133181IPR001471AP2/ERF domain
PRINTSPR003672.6E-11133144IPR001471AP2/ERF domain
PRINTSPR003672.6E-11155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MCGGAILSGF IRPSGAAAAA AKKQQQQQQP RRVTADLLWP GLGSRKGALG EQDFEADFRE  60
FVRGLGEDGG DADAAGDDDD EVQEVPPPEP AMFTFAAAAK AAPTAADDVM TPKPVQHDEP  120
TATSAKRNRK NQYRGIRQRP WGKWAAEIRD PSKGVRVWLG TYNTAEEAAR AYDAEARKIR  180
GKKAKVNFPD EEQDAQKSIL KPTTANPTKL APPTETCADE AFNNLNNGDN DLFAMFAFSD  240
SKAPVKPAEI ASFLPAVRPH VPTKRSASNM LSDQSSNSYG SSDFGWDDET MTSDYTSVFA  300
PNNAVPAYAD PACLQGEVSK RMRNTYGLAV PQGNGAPNLA QDMSGFNPEM NYLPLSYVES  360
SPDTSMDSLL QNDAPQDGAS TGDLWSLDEM LMAAGAY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-20131189160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A8e-20132189563ATERF1
3gcc_A8e-20132189563ATERF1
5wx9_A3e-191321911474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262269TKRSASNM
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G224500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956913.10.0ethylene-responsive transcription factor 1
TrEMBLK3ZU070.0K3ZU07_SETIT; Uncharacterized protein
STRINGSi030088m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-27related to AP2 12