PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G222100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 360aa MW: 38904.4 Da PI: 7.0131 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.4 | 1.6e-13 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd l+ ++ ++G g +W ++++g++R++k+c++rw++yl Sevir.2G222100.1.p 14 KGPWAPEEDAVLKAYIDEHGAGgNWIQLPHKIGLNRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 42.2 | 1.9e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T++Ed l+ + G++ W+tIa+ ++ gRt++++k++w++ Sevir.2G222100.1.p 69 GGFTEDEDRLICSLYISIGSR-WATIAAQLP-GRTDNDVKNHWNT 111 569******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.935 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.68E-25 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.4E-10 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-12 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-22 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.31E-7 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.71 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-21 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.16E-8 | 71 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MGRAPCCDKA TVKKGPWAPE EDAVLKAYID EHGAGGNWIQ LPHKIGLNRC GKSCRLRWLN 60 YLRPNIRHGG FTEDEDRLIC SLYISIGSRW ATIAAQLPGR TDNDVKNHWN TKLKRRLLGG 120 GRRPRAETRL QLLMSPTWQQ SSFAASSSAL ERMQASMRLH RRHHQQARLD IPAAFTLYNY 180 GSNLGAPLWP SPSPSPSPSP SPTASEGSEM RPRQLPGATS TAGYSGLWSH MPSSFSYYTG 240 AGVQEHMDGA CTPPLSTSTG GETMTAVGVE SSSSTPTTAS SASATFGDFD DEINMLLRQI 300 QCLPENGQIG DEAGDGVDGC CFRAMNHEAV DGSVVGSWSC CSTPGVDSVF DDYVQGYNQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G222100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT063260 | 0.0 | BT063260.1 Zea mays full-length cDNA clone ZM_BFc0043P16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956887.1 | 0.0 | transcription factor MYB41 | ||||
TrEMBL | K3ZUK1 | 0.0 | K3ZUK1_SETIT; Uncharacterized protein | ||||
STRING | Si030282m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13265 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 3e-67 | myb domain protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G222100.1.p |