PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G208300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 280aa MW: 30906.8 Da PI: 5.0585 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48 | 2.9e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv G +W+++++ g+ R++k+c++rw +yl Sevir.2G208300.1.p 14 KGPWTAEEDQKLVSFLLNNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 56.3 | 7.6e-18 | 70 | 111 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++eE++ +d++++lG++ W++Ia++++ gRt++++k++w+++ Sevir.2G208300.1.p 70 LSPEEEKTVIDLHAELGNR-WSKIASHLP-GRTDNEIKNHWNTH 111 69*****************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.5E-20 | 5 | 62 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.917 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.71E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.6E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.66E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 27.569 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-26 | 63 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-16 | 70 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.31E-13 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MGRQPCCDKV GLKKGPWTAE EDQKLVSFLL NNGQCCWRAV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SPEEEKTVID LHAELGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLKKMG 120 IDPVTHKPLQ PAPPPQEPTG SPEEEKIVTA VTPGHEAFCT DDVPLAHLLD DIVFPAGEEV 180 GAQPAPSDGI TMAYSPDQSS SSSSSSSYSA SVAAASSGGN SSADGEWPDW PPMDWPESMW 240 QLEDVVTGRT PWEFEDPFVT YQRIALFDHQ ETCCNVELF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-28 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G208300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT083735 | 1e-146 | BT083735.2 Zea mays full-length cDNA clone ZM_BFb0033K01 mRNA, complete cds. | |||
GenBank | BT085521 | 1e-146 | BT085521.2 Zea mays full-length cDNA clone ZM_BFc0028P12 mRNA, complete cds. | |||
GenBank | BT085625 | 1e-146 | BT085625.2 Zea mays full-length cDNA clone ZM_BFc0040A03 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956766.1 | 0.0 | protein ODORANT1 | ||||
TrEMBL | K3ZZA7 | 0.0 | K3ZZA7_SETIT; Uncharacterized protein | ||||
STRING | Si031939m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66230.1 | 2e-84 | myb domain protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G208300.1.p |