PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G195600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 295aa MW: 31294.8 Da PI: 7.2825 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66 | 7.7e-21 | 117 | 166 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ +l+g Sevir.2G195600.1.p 117 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDQAAYRLRG 166 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.90E-31 | 116 | 176 | No hit | No description |
SuperFamily | SSF54171 | 4.9E-23 | 117 | 176 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.354 | 117 | 174 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-35 | 117 | 180 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.0E-33 | 117 | 176 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 118 | 129 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.3E-15 | 118 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 140 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MAAAIDLSGE ELMRALEPFI RDASAPHGSS PLLQHHHPLS PTSPFSFHHA AAYGGGYPFA 60 AGAEGAGQLS PAQMQYIQAR LHLQRQAQSS VLGPRAQPMK VSSASAAAPT PPRPQKLYRG 120 VRQRHWGKWV AEIRLPRNRT RLWLGTFDTA EEAALAYDQA AYRLRGDAAR LNFPDNAASR 180 GPLHVSVDAK LQQLCQNIAA SKKGAKKSAA AATSSSAPTS NCSSPSSDDA TSSCLESAAE 240 SSCPSPSPSA SPESTVPEMQ QLDFSEAPWD EAAGFALTKY PSYEIDWDSL LAAN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-20 | 116 | 174 | 4 | 63 | ATERF1 |
3gcc_A | 3e-20 | 116 | 174 | 4 | 63 | ATERF1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G195600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727836 | 0.0 | KJ727836.1 Zea mays clone pUT5789 AP2-EREBP transcription factor (EREB109) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956678.1 | 0.0 | ethylene-responsive transcription factor RAP2-13 | ||||
TrEMBL | K3ZVQ3 | 0.0 | K3ZVQ3_SETIT; Uncharacterized protein | ||||
STRING | Si030684m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 2e-37 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G195600.1.p |