PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G181300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CO-like
Protein Properties Length: 407aa    MW: 43658.5 Da    PI: 5.0264
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G181300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.22.5e-06445540
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         C+ ++ ++   +C+++   lC +C  + H+       Ht++
  Sevir.2G181300.1.p  4 LCDFCGAQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                        6*****************************657888889876 PP
2zf-B_box24.74.8e-084789541
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                         C+++ ++++   C   ++ lC++C  ++H+       H++++
  Sevir.2G181300.1.p 47 LCDRCASQPAMVRCLVENVSLCQNCDWNGHSAgsstagHKRQT 89
                        7*****************************6688899999876 PP
3CCT64.43.3e-22349392144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R+ a++RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  Sevir.2G181300.1.p 349 RDSAITRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 392
                         899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.926147IPR000315B-box-type zinc finger
SMARTSM003362.4E-10147IPR000315B-box-type zinc finger
CDDcd000212.78E-7447No hitNo description
PROSITE profilePS501198.6884390IPR000315B-box-type zinc finger
PfamPF006432.0E-54790IPR000315B-box-type zinc finger
CDDcd000216.08E-54790No hitNo description
SMARTSM003360.314890IPR000315B-box-type zinc finger
PfamPF062035.6E-17349391IPR010402CCT domain
PROSITE profilePS5101715.477349391IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGALCDFCGA QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC  60
LVENVSLCQN CDWNGHSAGS STAGHKRQTI NCYSGCPSSA ELSRIWSFVS DIPNVAPEPN  120
CEQGISMMSI SDSGVSNQDN AAGDNNLLDM ASATLMSDLD TCDKPLVGSS SGAGVNLLPL  180
ATDQAAGSVD STTPKVPYTP DKDMFSKDSI YEDFCVDDVD LAFENYEELF GTSHIQTEQL  240
FDDAGIDSYF EVNEVPAGNS TEQPKLVQPA NSNAVSADSG MSNPGVKGDS SVCIPARQAR  300
SSLSLSFSGL TGESSAGDHQ DCVVSSLLLM GEPPWQAPGP ESSTPGGSRD SAITRYKEKK  360
KRRKFDKKIR YASRKARADV RKRVKGRFVK AGEAYDYDPL SQTRSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358362KKKRR
2358363KKKRRK
3359363KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G181300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9627670.0EU962767.1 Zea mays clone 245350 CCT motif family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956568.10.0zinc finger protein CONSTANS-LIKE 9 isoform X1
SwissprotQ9SSE51e-125COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLK3ZTV40.0K3ZTV4_SETIT; Uncharacterized protein
STRINGSi030034m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.13e-92B-box type zinc finger protein with CCT domain