PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G180400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 303aa    MW: 34233.7 Da    PI: 8.6896
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G180400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.43.8e-14131177147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++ WT++E+ +++++ + +G g+Wk I++ + ++Rt+ q+ s+ qky
  Sevir.2G180400.1.p 131 KQFWTPDEHRQFLCGLQVYGRGNWKNISKFFVTTRTPVQISSHAQKY 177
                         678*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-11126184IPR009057Homeodomain-like
PROSITE profilePS5129418.84126182IPR017930Myb domain
SuperFamilySSF466893.38E-17127183IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-14129181IPR006447Myb domain, plants
SMARTSM007171.3E-11130180IPR001005SANT/Myb domain
PfamPF002492.3E-11134177IPR001005SANT/Myb domain
CDDcd001676.18E-10134178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDPKSNGEWT ASEIMMMKSI MAWHNTSSSY TSNMNNKHTN IVDELQAWFP WKEKRQVTDL  60
YANLMVEMMP TNNNQCAASS SNPVTHNFAM SVEDPAIDNI NVLRSFDTEE MGDMRQAKEA  120
PRKQPAPRKE KQFWTPDEHR QFLCGLQVYG RGNWKNISKF FVTTRTPVQI SSHAQKYFHR  180
QQNSAKKQRY SINDVGLHEG NPLLIFAGGT YNPDDYGIPS KLGCCYTAQI RGAGASTAFK  240
HMPSPVANSS SAVALAMKGG RRQIPWTGDQ HANFFADEWI LSVDMNSVLL WSSILIRCMT  300
TY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124131PAPRKEKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G180400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438206.11e-84transcription factor SRM1
TrEMBLA0A3L6RXQ99e-85A0A3L6RXQ9_PANMI; Myb-like protein H
STRINGSb10g009580.14e-84(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-22MYB family protein