PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G180100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 308aa    MW: 34963.8 Da    PI: 4.6376
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G180100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.5e-13127173147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +g WT eE+ l++++ + +G g+Wk+I++++ ++Rt+ q+ s+ qky
  Sevir.2G180100.1.p 127 KGFWTIEEHRLFLHGLRVYGRGNWKSISKYFVTTRTPMQVSSHAQKY 173
                         688*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.322123178IPR017930Myb domain
SuperFamilySSF466897.59E-17125179IPR009057Homeodomain-like
SMARTSM007171.1E-9126176IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-10127172IPR009057Homeodomain-like
PfamPF002491.8E-10128173IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.0E-13128176IPR006447Myb domain, plants
CDDcd001675.14E-9130174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MSPNSEQVWS VSEIMTMKSL IARHNTTTNN NTDIVEELQA RFPWKEKRQV TDLYVDLVVD  60
MIESGNQDAA ARSSHMIKDI ATSVEDPGID NLDMLYGYLM EETRSMGQVE EAQRRQTATQ  120
NERPNTKGFW TIEEHRLFLH GLRVYGRGNW KSISKYFVTT RTPMQVSSHA QKYFLKLENT  180
ARMQQRYSIN DVSLYDTEPW VLNNASGRQH GLTGGTFIPN DHSSGDELTD MNNLSEVQSP  240
LLYHANQATT GSIEVDAFAG SQQQIIGDTS TSEVPVMEGD GSQMPWTGDQ HADFFLAYEW  300
IWNMDMK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G180100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680035.10.0transcription factor SRM1-like
TrEMBLK4A0I60.0K4A0I6_SETIT; Uncharacterized protein
STRINGSi032375m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-23MYB family protein