PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G178000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family HB-other
Protein Properties Length: 382aa    MW: 42129.3 Da    PI: 6.9015
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G178000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.83.8e-081475756
                        --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHHH CS
            Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRakek 56
                        f ++++ e+e+  ++  n  p+++  + LA+k            ++ +qV +WFqNrR+ ++
  Sevir.2G178000.1.p 14 FLPSEVAEMEARLQQlnNAIPTRTVLQTLADKFsasperagrvTIQPKQVWNWFQNRRYSHR 75
                        55677888888888666999***************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0054781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-61380IPR009057Homeodomain-like
CDDcd000861.42E-41375No hitNo description
PROSITE profilePS500719.9931377IPR001356Homeobox domain
SuperFamilySSF466891.54E-91377IPR009057Homeodomain-like
PfamPF000461.4E-51475IPR001356Homeobox domain
PfamPF167194.7E-41133260IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGRPPSTGAP AFRFLPSEVA EMEARLQQLN NAIPTRTVLQ TLADKFSASP ERAGRVTIQP  60
KQVWNWFQNR RYSHRAKTTR AAPPPAAKMT PSGADHLQHA ANSSAFRAGQ PSAVAAHHGS  120
SPSAGKNPVE GVQVEFEAKS ARDGAWYDVA AFLSHRLFES GEPEVRVRFS GFGAEEDEWI  180
NVRKCVRQRS LPCEATECVA VLPGDLILCF QEGKEQALYF DARVLDAQRR RHDVRGCRCR  240
FLVRYDHDSS EEIVPLRKVC RRPETDYRLQ ILHAARAAAT MDVHTPPKEV KLELTSNEKS  300
PAEQKAPKQH KMMDVNTDEV TMVSGVEQEV TPAKAGAGAS LPSATPETRN SSSDMMRDGE  360
SASVVEDDDE VQVVEKMKEG D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A3e-471362646134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B3e-471362646134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A3e-471362646134SHH1 SAWADEE
4iur_B3e-471362646134SHH1 SAWADEE
4iut_A3e-471362646134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B3e-471362646134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A3e-471362646134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B3e-471362646134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A3e-471362646134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B3e-471362646134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G178000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956551.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680276.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680277.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680278.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ71e-122SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLK3ZU860.0K3ZU86_SETIT; Uncharacterized protein
STRINGSi030167m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-108sequence-specific DNA binding transcription factors;sequence-specific DNA binding