PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G177700.3.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 280aa    MW: 30892.9 Da    PI: 4.5374
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G177700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-1672122155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+++GVr ++ +grW+AeIrd +     r +r ++g+++++e Aa+a+ a++++++ 
  Sevir.2G177700.3.p  72 SRFRGVRKRP-WGRWAAEIRDpV-----RkTRKWIGSYDSEEAAAAAYQAYANQIHA 122
                         789*******.**********44.....55**********9999********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-1072122IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-1572122IPR016177DNA-binding domain
CDDcd000181.81E-1572107No hitNo description
Gene3DG3DSA:3.30.730.101.3E-1873120IPR001471AP2/ERF domain
SMARTSM003803.7E-1373137IPR001471AP2/ERF domain
PROSITE profilePS5103218.3673130IPR001471AP2/ERF domain
PRINTSPR003671.8E-77485IPR001471AP2/ERF domain
PRINTSPR003671.8E-796112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MMPCMQKVRI FCSDPDATDS SDDEDGQNIK VKKMVREVLV PVKNSKTSKC LETLVPCGTK  60
DLEVSEKKGK SSRFRGVRKR PWGRWAAEIR DPVRKTRKWI GSYDSEEAAA AAYQAYANQI  120
HAEVLAKKAQ ESVSERAALS SSSVSCVSSS APCEQTARVQ KGVFMEIDPE PVDEILLNFS  180
TPKEISVDVL LGRIDETPVG DSVSLADELP LDDFTRLEDA FPISDFIGAV HKPLDDDYIG  240
LADISHLPLP MKDPAFNLDA ELDWSGFDFT AIEHELQVL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G177700.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956545.10.0ethylene-responsive transcription factor ERF021
RefseqXP_004956547.10.0ethylene-responsive transcription factor ERF021
RefseqXP_022679717.10.0ethylene-responsive transcription factor ERF021
TrEMBLK3ZVW00.0K3ZVW0_SETIT; Uncharacterized protein
STRINGSi030741m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.12e-14ERF domain protein 11