PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G177400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 288aa    MW: 32700.8 Da    PI: 4.7561
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G177400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.81.5e-0978121149
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 
                         s+y+GVr +  +grW AeIr p     +k+     ++t+eeAa+a+ a 
  Sevir.2G177400.1.p  78 SRYRGVRLRD-SGRWQAEIRNPL----TKKREYSLHDTEEEAAAAYQAK 121
                         79*******9.7*********73....344444689*********9775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-978126IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.0E-1179121IPR001471AP2/ERF domain
SMARTSM003802.3E-479132IPR001471AP2/ERF domain
PROSITE profilePS5103212.36579135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MLRSRKMPPM RKVRIFCSDP DATDSSGDEN DENPKKEKKI IREVLVPVKK YKTSQPLRPI  60
MPCGIKDLNG PERKVPSSRY RGVRLRDSGR WQAEIRNPLT KKREYSLHDT EEEAAAAYQA  120
KWNQFHVEML AMKAEPPMSE HAASNSSLVS CVSSSVSCEQ KAQEAQNRVG PLMEMHREPM  180
DESLLNFSPK ALEISEDVML NPKDEHQASD SDSPADEFPP DGFTRQDMFT VRDFITATYK  240
PLDDDYIGLA DISHLPLPIK DPEFDLDAEL DWSGFDFASM EHELELL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G177400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956541.10.0ethylene-responsive transcription factor ERF118
RefseqXP_004956542.10.0ethylene-responsive transcription factor ERF118
RefseqXP_004956543.10.0ethylene-responsive transcription factor ERF118
RefseqXP_004956544.10.0ethylene-responsive transcription factor ERF118
RefseqXP_012698904.10.0ethylene-responsive transcription factor ERF118
RefseqXP_022679546.10.0ethylene-responsive transcription factor ERF118
TrEMBLK3ZVS50.0K3ZVS5_SETIT; Uncharacterized protein
STRINGSi030706m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50203763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.24e-10ERF family protein