PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G167600.5.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 371aa    MW: 40711.6 Da    PI: 9.8721
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G167600.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.81.8e-1185114534
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeek 34 
                         k  rr+++NReAAr+sR+RKka+i++Le+ 
  Sevir.2G167600.5.p  85 KTLRRLAQNREAARKSRLRKKAYIQQLETS 114
                         788************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.3E-881143IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.0E-883125No hitNo description
PROSITE profilePS502178.82983126IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.85E-785119No hitNo description
PfamPF001701.6E-885114IPR004827Basic-leucine zipper domain
PROSITE patternPS00036088103IPR004827Basic-leucine zipper domain
PfamPF141442.8E-29169242IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MHVAEPIPAK GVSMGMVAAM MPNGNSSSPR RQEEGGQRSA PPPPAPAVPL PNSAKENRSS  60
LTKKEATSGG KGATSGDQER VRDPKTLRRL AQNREAARKS RLRKKAYIQQ LETSRIRLSQ  120
LEQQVQVARV QGVFLGAGEQ PAGFPSAPSP AAVFDMEYGR WVEEHSKLMF QLRAALNEHM  180
ADEQLQAFVN GAMAQHEELL NLKGAMARAD VFHLLSGVWA SPAERCFLWL GGFRPSEVIK  240
VMLKHVEPLS EGQILGIYNL QQSVQEREEA LNHTMEATQQ SISDIVAAPD VAPATFIGHM  300
SLAMNKVASM ESFVLQADGL RQQTLHKLHH ILTTRQAARC MVAIADYFHR LRALSTLWVA  360
RPRQEDGPGL *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G167600.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698770.10.0transcription factor TGAL7 isoform X2
SwissprotQ6H4340.0TGAL7_ORYSJ; Transcription factor TGAL7
TrEMBLK3ZTN60.0K3ZTN6_SETIT; Uncharacterized protein
STRINGSi029966m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.21e-123bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]