PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.2G157800.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

FAR1

Protein Properties

Length: 388aa MW: 45776.4 Da PI: 9.105

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.2G157800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26.2	2.7e-08	2	37	57	91
FAR1 57 etrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 + r+gCka +k+k ++ ++ w ++++leHnH+l p Sevir.2G157800.1.p 2 SMRCGCKAFVKIKWNQkKDYWFFERIRLEHNHPLHP 37 579********999899************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-5	2	37	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	6.1E-32	158	252	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MSMRCGCKAF VKIKWNQKKD YWFFERIRLE HNHPLHPSPT VTQFLRIQKD KDPIVMGIVD 60 QMHRCDASHN TTVNVLVELY GGRQNFTFTE MDLRNRKAAN AREERENDIP KLLEFFREMK 120 AHNEYFYYEL QVDSENVIKN VFWSHASQRA EYRDFGDVVT FDTTYKTNMY SMPLAMFVGP 180 NHQLQNVVFG QALLQDEQAN TFEWLFGAFK NCMSGGRDPR CILTDQDSSM AAAIKKVFKQ 240 TQHRLCRWHM LKKYKAELKK LYKIYDGLKI KLVTLINHPL TPTEFEFAWN ELVDEYGIRE 300 DDTIRGLWES RKLWVAANFK PLYCGRMTST QRSESVNKMI KGSGFTGHMT CMSKFARRML 360 DFIQHTNHTA GGETHWSQSW QYAWFQH*

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MSMRCGCKAF VKIKWNQKKD YWFFERIRLE HNHPLHPSPT VTQFLRIQKD KDPIVMGIVD  60
QMHRCDASHN TTVNVLVELY GGRQNFTFTE MDLRNRKAAN AREERENDIP KLLEFFREMK  120
AHNEYFYYEL QVDSENVIKN VFWSHASQRA EYRDFGDVVT FDTTYKTNMY SMPLAMFVGP  180
NHQLQNVVFG QALLQDEQAN TFEWLFGAFK NCMSGGRDPR CILTDQDSSM AAAIKKVFKQ  240
TQHRLCRWHM LKKYKAELKK LYKIYDGLKI KLVTLINHPL TPTEFEFAWN ELVDEYGIRE  300
DDTIRGLWES RKLWVAANFK PLYCGRMTST QRSESVNKMI KGSGFTGHMT CMSKFARRML  360
DFIQHTNHTA GGETHWSQSW QYAWFQH*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.2G157800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004959304.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A368PYX3	0.0	A0A368PYX3_SETIT; Uncharacterized protein
STRING	Pavir.Ib02914.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-52	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Sevir.2G157800.1.p