PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G143800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 276aa    MW: 29428.2 Da    PI: 6.3454
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G143800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.55e-16117166355
                 AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + GVr ++ +g+++AeIrd    + k +r++lg+f+++e Aa a+++a+ + +g
  Sevir.2G143800.1.p 117 FIGVRKRP-WGKFAAEIRDsT--R-KGARVWLGTFDSPEAAALAYDQAAFSVRG 166
                         57******.**********32..2.24**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.8E-31116180IPR001471AP2/ERF domain
PROSITE profilePS5103221.654116174IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-20117176IPR016177DNA-binding domain
CDDcd000184.44E-16117175No hitNo description
PfamPF008476.4E-12117166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-27117175IPR001471AP2/ERF domain
PRINTSPR003677.8E-8117128IPR001471AP2/ERF domain
PRINTSPR003677.8E-8140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEQYASYLCS SSSYDIHHPA SGYGGAGTAL DAGGGGDDMQ RLLNELMLDM AESDYSFSDD  60
MEAASSADSS SSACSANDSH HHHHQQQRQQ PDDQNTASDS EKRSSSAAQQ AQRPATFIGV  120
RKRPWGKFAA EIRDSTRKGA RVWLGTFDSP EAAALAYDQA AFSVRGAAAV LNFPVERVQD  180
SLRALALSSS SSSSSSAAAW GSPVLALKSR HSIRKRSPNK NKKLPQHQRP QQQAAAVVAG  240
APQPQPAYPG SVVELEDLGA DYLDELLRVS SEPLH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-241151761374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G143800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956268.10.0ethylene-responsive transcription factor 1B
TrEMBLA0A368Q0S70.0A0A368Q0S7_SETIT; Uncharacterized protein
STRINGSi031946m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-38ethylene response factor 1