PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G140000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family BES1
Protein Properties Length: 795aa    MW: 87771.1 Da    PI: 6.474
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G140000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822121.71e-371672924125
              DUF822   4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl....eeaeaagssasasp 90 
                          r++  +E+E++k+RER+RRai+ +i+aGLR++Gny l++raD+neV++AL+reAGwvv +DGtt++ +         ++ ++ +   a p
  Sevir.2G140000.1.p 167 SRRRAREEKERTKLRERQRRAITGRILAGLRQHGNYSLRARADINEVIAALAREAGWVVLPDGTTFPSSAAAAaqpgPRPVMVAAAPLALP 257
                         6889999************************************************************655433222255666666666666 PP

              DUF822  91 esslq.sslkssalaspvesysaspksssfpspssl 125
                         +s+   ++  s   a p+ s ++ p+ss  +sp ++
  Sevir.2G140000.1.p 258 TSPALpLRGISPVAARPI-SHRPAPASSLLLSPPRA 292
                         666653333333333333.44566666666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.4E-36167297IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514454.68E-190351789IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.803.3E-207354788IPR013781Glycoside hydrolase, catalytic domain
PfamPF013733.9E-115360777IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-77391405IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-77412430IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-77434455IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060438446IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008427.0E-7517526IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007505.4E-77527549IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-77600619IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-77634650IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-77651662IPR001554Glycoside hydrolase, family 14
PRINTSPR007505.4E-77669692IPR001554Glycoside hydrolase, family 14
PRINTSPR008427.0E-7672682IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007505.4E-77709731IPR001554Glycoside hydrolase, family 14
PRINTSPR008427.0E-7760774IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008427.0E-7775789IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 795 aa     Download sequence    Send to blast
MGVGKGRGAC EHVCVRPWPL GTGREAPNHM RPMCGANPPP RPARPFRDGG EGEEATRRRS  60
QACAPPGHRG RPSLHTCRPR AATVPTISLQ ARRRTARTRE RPRWSPPLSG MQQAAGPAED  120
EDEEMGVKEE DGDEEEEEED DGYYMDPCPA AVASPPGVGG GRANPASRRR AREEKERTKL  180
RERQRRAITG RILAGLRQHG NYSLRARADI NEVIAALARE AGWVVLPDGT TFPSSAAAAA  240
QPGPRPVMVA AAPLALPTSP ALPLRGISPV AARPISHRPA PASSLLLSPP RAAGAAAASS  300
RPPADDVPDG GSSSHLLAVP VNVPMDPAVA EDAAVAKQVP EVAPRPPERD FAGTPYVPVY  360
VMLPLGVVNV SGEVVDADEL VGQLRVLKAA GVDGVMVDCW WGNVEAHRPQ EYNWTGYKRL  420
FQMIRELKLK LQVVMSFHEC GGNVGDDVSI PLPHWVTEIG RSNPDIYFTD RAGRRNTECL  480
SWGIDKERVL QGRTAVEVYF DFMRSFRVEF DEYFEDAIIS EIEIGLGACG ELRYPSYPAK  540
HGWKYPGIGE FQCYDRYLQK NLRRAAEERG HTIWARGPDN AGHYNSEPNL TGFFCDGGDY  600
DSYYGRFFLN WYSQMLVDHA DRVLMLARLA FEGLNIAVKV SGVHWWYKTA SHAAELTAGF  660
YNPCNRDGYA PIAAVLKKYD AALNFTCVEL RTMDQHEVYP EAFADPEGLV WQVLNAAWDA  720
GLQVASENAL PCYDREGFNK ILENAKPLND PDGRHLFGFT YLRLSKVLFE RPNFFEFERF  780
VKRMHGEAVL DLQA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bfn_A1e-16035678711444BETA-AMYLASE
1bya_A1e-16035678711444BETA-AMYLASE
1byb_A1e-16035678711444BETA-AMYLASE
1byc_A1e-16035678711444BETA-AMYLASE
1byd_A1e-16035678711444BETA-AMYLASE
1q6c_A1e-16035678711444beta-amylase
1wdp_A1e-16035678711444Beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G140000.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9569050.0EU956905.1 Zea mays clone 1577050 beta-amylase mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699441.20.0beta-amylase 2, chloroplastic
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLK3ZQS70.0K3ZQS7_SETIT; Beta-amylase
STRINGSi028957m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21413663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]