PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G139000.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NF-YB | ||||||||
Protein Properties | Length: 150aa MW: 16259.5 Da PI: 5.3785 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 46.6 | 8.1e-15 | 38 | 131 | 6 | 91 |
NF-YB 6 rflPianvsrimkkvlP........anakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 ++lP a v r++k l a+ + kda e + fi ++++ a+d c++ kr+tin+dd+l al ++ f ++vepl+ l+ Sevir.2G139000.2.p 38 EELPKAIVRRLVKDKLAhiagggegAEVIVNKDAMAAFAESARIFIHYLSATANDMCKESKRQTINADDVLNALDEMDFPEFVEPLRSSLQ 128 57889999999998886222222112345889999****************************************************9998 PP NF-YB 89 kyr 91 + + Sevir.2G139000.2.p 129 ETK 131 765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.1E-29 | 33 | 147 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.5E-9 | 39 | 111 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
SuperFamily | SSF47113 | 6.38E-25 | 40 | 145 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MARKRTKEAE PQPAAAAQEE PAPAPAAPAA AMTEAEVEEL PKAIVRRLVK DKLAHIAGGG 60 EGAEVIVNKD AMAAFAESAR IFIHYLSATA NDMCKESKRQ TINADDVLNA LDEMDFPEFV 120 EPLRSSLQET KMQIEGQKQT KSKRKREGN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G139000.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT060559 | 1e-129 | BT060559.1 Zea mays full-length cDNA clone ZM_BFb0015O22 mRNA, complete cds. | |||
GenBank | EU962697 | 1e-129 | EU962697.1 Zea mays clone 244791 DNA polymerase epsilon subunit 3 mRNA, complete cds. | |||
GenBank | EU964046 | 1e-129 | EU964046.1 Zea mays clone 275447 DNA polymerase epsilon subunit 3 mRNA, complete cds. | |||
GenBank | KJ728301 | 1e-129 | KJ728301.1 Zea mays clone pUT6581 CCAAT-DR1 transcription factor (CADR16) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004956211.1 | 3e-64 | DNA polymerase epsilon subunit 3 | ||||
TrEMBL | A0A0A9GDS4 | 4e-65 | A0A0A9GDS4_ARUDO; Uncharacterized protein | ||||
STRING | Si031288m | 1e-63 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27470.1 | 6e-34 | nuclear factor Y, subunit B11 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G139000.2.p |