PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G118100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 264aa    MW: 26420.4 Da    PI: 9.1812
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G118100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.41.5e-17101150355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + GVr+++ +gr++AeIrd + ng  +r++lg+f++ae Aa a+++a+++ +g
  Sevir.2G118100.1.p 101 FVGVRRRP-WGRFAAEIRDSTRNG--ARVWLGTFDSAEAAAMAYDQAALSARG 150
                         68******.**********44465..***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.1E-31100164IPR001471AP2/ERF domain
PROSITE profilePS5103221.918100158IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-27101159IPR001471AP2/ERF domain
PfamPF008471.3E-12101150IPR001471AP2/ERF domain
PRINTSPR003674.1E-8101112IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-20101160IPR016177DNA-binding domain
CDDcd000182.50E-15101159No hitNo description
PRINTSPR003674.1E-8124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
METKSTRAPP FHPAHMELLH PIHGGFYLYG DYTAATSSSS SSTSSSDSLP FGMGGGGCCG  60
DEVPAPAASE ASVPAAAAGG AGRAGQLAAP GSSSSDKGAA FVGVRRRPWG RFAAEIRDST  120
RNGARVWLGT FDSAEAAAMA YDQAALSARG PGAALNFPVE RVQESLRALA LGGCSGGGGA  180
AASPAGSPVL ALKSRHSKRK RRKKSEIAAA AAAAAAAAAN GAVASGRSRS KSAAAAAEQQ  240
RFVVELEDLG ADYLEELLRI SES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-231011601574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197202KRKRRK
2197203KRKRRKK
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G118100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959165.21e-104ethylene-responsive transcription factor ERF094-like
RefseqXP_022680468.11e-104ethylene-responsive transcription factor ERF094-like
RefseqXP_022680469.11e-104ethylene-responsive transcription factor ERF094-like
RefseqXP_022680470.11e-104ethylene-responsive transcription factor ERF094-like
RefseqXP_022680471.11e-104ethylene-responsive transcription factor ERF094-like
SwissprotQ8VYM02e-39ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A368PXB41e-102A0A368PXB4_SETIT; Uncharacterized protein
STRINGPavir.Ba02374.1.p8e-76(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-20ethylene response factor 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]