PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G109600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB_related | ||||||||
Protein Properties | Length: 311aa MW: 34908.7 Da PI: 5.6501 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.2 | 4.3e-14 | 139 | 185 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r WT+eE+ +++ + +++G g Wk I+r++ ++Rt+ q+ s+ qky Sevir.2G109600.1.p 139 RSFWTKEEHRQFLYGLRKYGRGKWKDISREFVTTRTPVQVSSHAQKY 185 567*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.595 | 134 | 190 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-12 | 138 | 188 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.66E-16 | 138 | 191 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-14 | 139 | 189 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.8E-11 | 139 | 187 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.69E-10 | 142 | 186 | No hit | No description |
Pfam | PF00249 | 2.7E-10 | 142 | 185 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MDPKFNGEWS ASDIKMVKSL IASHNPNNNY ADGMNKKHND IVNDIQVWFP WKERHQVIEL 60 YVELVVEMIS LTQSGNQSVV AIDNLVSDNS GIPVGNPSID NMDMSFANMK GKTPEATRMV 120 DEVPQRKAIV PQQGGWHNRS FWTKEEHRQF LYGLRKYGRG KWKDISREFV TTRTPVQVSS 180 HAQKYFRRQN NSEKQRYSIN DVNLYDAEPW AQNNSSNWEA PAFAGGAYNP NYYGSGSQVA 240 TMNNLAQVWP PFMYSADPAS SSQATTWTGQ QMGPSSSAAL ALEGAGSQMA WTGDQEGDIL 300 PEQWMNVDNV * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G109600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004959144.1 | 0.0 | transcription factor SRM1 | ||||
TrEMBL | K3ZZY7 | 0.0 | K3ZZY7_SETIT; Uncharacterized protein | ||||
STRING | Si032172m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP842 | 30 | 133 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 2e-25 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G109600.1.p |