PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G103700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | TCP | ||||||||
Protein Properties | Length: 145aa MW: 15967.2 Da PI: 11.846 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 70.3 | 6.2e-22 | 38 | 108 | 2 | 73 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 a +kdrhsk+ T +g+RdR v l +++a++f+d+q LG d++sk+ieWL+ +ak++ + ++ +++a+ + Sevir.2G103700.1.p 38 ARGKDRHSKVVTVRGLRDRHVQL-VPTAIQFYDIQYCLGIDQPSKAIEWLIHAAKTSTSSMLSLANTPAHTA 108 779********************.689******************************999999977776333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 18.059 | 40 | 97 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 7.7E-20 | 40 | 103 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MKEIGMERTA ASARTPRWTA ARWPPRRHGG RAGWRTAARG KDRHSKVVTV RGLRDRHVQL 60 VPTAIQFYDI QYCLGIDQPS KAIEWLIHAA KTSTSSMLSL ANTPAHTAPH LDPCAHHRSC 120 REPPAPHRHR LRGPVGESPR AGGG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-13 | 45 | 97 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-13 | 45 | 97 | 1 | 54 | Putative transcription factor PCF6 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G103700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004959137.1 | 3e-99 | transcription factor TCP13-like | ||||
TrEMBL | A0A368PXN6 | 7e-98 | A0A368PXN6_SETIT; Uncharacterized protein | ||||
STRING | Pavir.J37910.1.p | 3e-26 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP58313 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30210.2 | 4e-21 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G103700.1.p |