PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G090100.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 279aa    MW: 30943.8 Da    PI: 5.6456
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G090100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.57.5e-51161411128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrFhPtdeelv +yL+++++g+  ++  +i+evd+y+++Pw+Lp+++  +++ewyfF++rd+ky++g+r+nra+ +gyWkatg dk+
  Sevir.2G090100.1.p  16 LPPGFRFHPTDEELVAHYLCARAAGRAPPV-PIIAEVDLYRFDPWELPERALFGRREWYFFTPRDRKYPNGSRPNRAAGTGYWKATGADKP 105
                         79*************************999.88***************87778999*********************************** PP

                 NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         v +  g++ g+kk Lvfy+g+ p+g+kt+W+mheyrl
  Sevir.2G090100.1.p 106 VEH-AGRTAGIKKALVFYHGKPPRGVKTEWIMHEYRL 141
                         **9.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-6212168IPR003441NAC domain
PROSITE profilePS5100558.93716168IPR003441NAC domain
PfamPF023651.6E-2617141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MVVPAHRRDA EAELNLPPGF RFHPTDEELV AHYLCARAAG RAPPVPIIAE VDLYRFDPWE  60
LPERALFGRR EWYFFTPRDR KYPNGSRPNR AAGTGYWKAT GADKPVEHAG RTAGIKKALV  120
FYHGKPPRGV KTEWIMHEYR LAGAGAKKPG KDGSLRLDDW VLCRLYHKKN EYEKMQGHKE  180
KVVEAEASLT DTRTPESEID DDAFPAFDDM APAPAPTTAP APAGAVQPKE EVQDFGSLGG  240
DDWLAGINLD DLQMDADFNM LVSPVAPKAD QDGGFPFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-9281747174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G090100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses (PubMed:18813954, PubMed:20632034). Induced by dehydration and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0417451e-160BT041745.2 Zea mays full-length cDNA clone ZM_BFb0043E11 mRNA, complete cds.
GenBankDQ2442801e-160DQ244280.1 Zea mays clone 4143 mRNA sequence.
GenBankHQ8586771e-160HQ858677.1 Zea mays clone UT1133 NAC transcription factor mRNA, partial cds.
GenBankKP2835361e-160KP283536.1 Zea mays NAC protein (Zma000584) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955826.10.0NAC domain-containing protein 67
SwissprotQ7EZT11e-116NAC67_ORYSJ; NAC domain-containing protein 67
TrEMBLK3ZVX10.0K3ZVX1_SETIT; Uncharacterized protein
STRINGSi030752m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44143071
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.14e-80NAC domain containing protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  3. Ghosh T,Rai M,Tyagi W,Challam C
    Seedling stage low temperature response in tolerant and susceptible rice genotypes suggests role of relative water content and members of OsSNAC gene family.
    Plant Signal Behav, 2016. 11(5): p. e1138192
    [PMID:26829663]
  4. Rahman H,Ramanathan V,Nallathambi J,Duraialagaraja S,Muthurajan R
    Over-expression of a NAC 67 transcription factor from finger millet (Eleusine coracana L.) confers tolerance against salinity and drought stress in rice.
    BMC Biotechnol., 2016. 16 Suppl 1: p. 35
    [PMID:27213684]