PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G089200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NF-YC | ||||||||
Protein Properties | Length: 229aa MW: 24501.2 Da PI: 9.1697 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 164.6 | 1.3e-51 | 45 | 150 | 1 | 101 |
NF-YC 1 qlksfwekq.....iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 ql++fw +q + +a+dfknh+lPlarik i+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+++d+aaa++rt Sevir.2G089200.1.p 45 QLQAFWGYQrqeaeRASASDFKNHQLPLARIKMIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAMART 135 79****9996665556689************************************************************************ PP NF-YC 87 difdflvdivprdel 101 d+fdflvdivpr+e Sevir.2G089200.1.p 136 DVFDFLVDIVPREEA 150 ************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 7.38E-31 | 30 | 141 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.5E-19 | 69 | 132 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 8.0E-36 | 70 | 147 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MDNQPLPYST GQPPATGGAP VPGVLGAAGP PPVPHHHLLQ QQQAQLQAFW GYQRQEAERA 60 SASDFKNHQL PLARIKMIMK ADEDVRMISA EAPVLFAKAC ELFILELTIR SWLHAEENKR 120 RTLQRNDVAA AMARTDVFDF LVDIVPREEA KEEPGSALGF AAAGPGAVGG GAAPAAGMPE 180 GRRRTSIRGP ATARKGKGLP QQAMAVPLDS LLLHLRALSD LLRSFVLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 8e-50 | 53 | 147 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 125 | RRTLQRN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G089200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT085720 | 0.0 | BT085720.2 Zea mays full-length cDNA clone ZM_BFc0051B15 mRNA, complete cds. | |||
GenBank | EU957220 | 0.0 | EU957220.1 Zea mays clone 1585988 nuclear transcription factor Y subunit C-1 mRNA, complete cds. | |||
GenBank | JX428515 | 0.0 | JX428515.1 Zea mays subsp. mays clone pUT3114 CA5P11 CCAAT-HAP5 type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004984993.1 | 1e-124 | nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | K4AE93 | 1e-122 | K4AE93_SETIT; Uncharacterized protein | ||||
STRING | Si037200m | 1e-123 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7345 | 35 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 8e-62 | nuclear factor Y, subunit C4 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G089200.1.p |