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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Sevir.2G088600.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 106aa MW: 12532.4 Da PI: 9.0168 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 24.8 | 7.2e-08 | 2 | 35 | 59 | 91 |
FAR1 59 rtgCkaklkvkkek.dgkwevtkleleHnHelap 91
r++Cka +k+k + ++ w ++++leHnH+l p
Sevir.2G088600.1.p 2 RCECKAFVKIKWNLkKDYWFFERIRLEHNHPLHP 35
89*********998899**************975 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 4.6E-5 | 2 | 35 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 106 aa Download sequence Send to blast |
MRCECKAFVK IKWNLKKDYW FFERIRLEHN HPLHPSPTVT QFLRIQKDKD PIVMGIVDQM 60 HRCDASHNTT INVLAELCGG QQNFTFTEMD LRNRKATTAR EEREK* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Sevir.2G088600.1.p |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004955119.1 | 5e-65 | protein FAR1-RELATED SEQUENCE 5 | ||||
| TrEMBL | K4A1A6 | 3e-74 | K4A1A6_SETIT; Uncharacterized protein | ||||
| STRING | Si032649m | 5e-75 | (Setaria italica) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP16437 | 3 | 6 |
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Sevir.2G088600.1.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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