PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G082500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 247aa MW: 27673.7 Da PI: 4.5734 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 25.5 | 3.2e-08 | 7 | 35 | 2 | 34 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslg 34 +++G+r+++ rg+W+AeIrdp + r++l+ Sevir.2G082500.1.p 7 QFRGIRRRP-RGKWAAEIRDP-----HkgVRVWLE 35 69*******.8*********7.....325999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.36E-9 | 7 | 57 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 11.627 | 7 | 69 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.8E-13 | 7 | 61 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-14 | 7 | 57 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.35E-17 | 7 | 56 | No hit | No description |
PRINTS | PR00367 | 9.3E-9 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 9.3E-9 | 37 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MRRRDNQFRG IRRRPRGKWA AEIRDPHKGV RVWLELIYDS EARRVRGKKA KVNFPDETPV 60 ASDKRLAEPT SVKVAKTGTQ EKLTINNMTN SNVYQHPVVD HTVPEPSVQT QNISLENSVA 120 SVQEPLVNLS SYQGRSFNSC SEFRLENDTR TTDIPSVLAP VPTLTEVDES AFLQGTADAV 180 VPPVTGDASV DLFEWQPYLE DFLIDSSDES FNHSLVCECD GSQSPDVGSN MNLWNFDDMP 240 VPDDFF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G082500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004964607.1 | 1e-107 | ethylene-responsive transcription factor 1 | ||||
Swissprot | Q6K7E6 | 4e-63 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | K3ZZC5 | 1e-174 | K3ZZC5_SETIT; Uncharacterized protein | ||||
STRING | Si031957m | 1e-175 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 1e-20 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G082500.1.p |