PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G079400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 303aa    MW: 32666.8 Da    PI: 8.3926
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G079400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.3e-194090155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  Sevir.2G079400.1.p 40 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAARAYDEAACLLRG 90
                        79********.7*********32...35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-134090IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-194098IPR016177DNA-binding domain
CDDcd000181.14E-314099No hitNo description
SMARTSM003802.0E-3541104IPR001471AP2/ERF domain
PROSITE profilePS5103219.8364198IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-284198IPR001471AP2/ERF domain
PRINTSPR003671.1E-74253IPR001471AP2/ERF domain
PRINTSPR003671.1E-76480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MELQFQQQPQ SHPQQQCSYQ LPVTKETKPK VRTKCGGGGS KFVGVRQRPS GRWVAEIKDT  60
TQKIRMWLGT FETAEEAARA YDEAACLLRG ANTRTNFAAG AHASPPDSLL AARIRGILNH  120
KKLKKNTALP TVTFFPAAYH RAGHDAIATA AATSSTSTST ITTTTSGVSP SSSPSSSINF  180
SMSSNGIRAP ILPARSIAEE VYRPYLISGS EELQMASQQY EQSWALNTSP PSTIGCDMAN  240
NNACTAVADA ELKIKPEKHC SVSPHGMDKV QDKDLFDTGN DPSDSLWDLP PICPLSCRSL  300
MY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G079400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0042739e-68AP004273.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0431A02.
GenBankAP0149639e-68AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126159e-68CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699021.10.0ethylene-responsive transcription factor RAP2-11
TrEMBLA0A368PWJ20.0A0A368PWJ2_SETIT; Uncharacterized protein
STRINGSi033237m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.15e-28related to AP2 11