PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G075700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 304aa    MW: 32116 Da    PI: 6.0278
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G075700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.82e-16158206556
                 AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         GVr ++ +g+++AeIrd + ng   r+++g+f+t+e Aa  +++a+ +++g+
  Sevir.2G075700.1.p 158 GVRKRP-WGKYAAEIRDSTRNG--ERVWIGTFDTPEAAALSYDQAAYSMRGA 206
                         9*****.**********44465..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.692155213IPR001471AP2/ERF domain
PRINTSPR003679.5E-7156167IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-20157215IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-26158214IPR001471AP2/ERF domain
CDDcd000188.14E-22158214No hitNo description
PfamPF008472.3E-11158205IPR001471AP2/ERF domain
SMARTSM003801.0E-28158219IPR001471AP2/ERF domain
PRINTSPR003679.5E-7179195IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEPHFSSSYY YGHGVTTAAA YAHCDSQYSL QHYGGGVMDA SAGFQQPSSA YDPHAYNGDY  60
YNSSSSNSWS SSSGAQTSHH HEIQQLHFGG GGGGMDEYYG YQADGMAMDQ FSAIMGAASI  120
STTTSSNSSS ASTASAPASS AAGYFQQPEA ADDAPLIGVR KRPWGKYAAE IRDSTRNGER  180
VWIGTFDTPE AAALSYDQAA YSMRGAAAVL NFPVEHVQES LRALGLSGAA GDDSPVLALK  240
RRHCIRKRLP KNKKVAAAGK EQTAATSSHG HARQNQVAAA SCVLELEDLG VDYLEELLAL  300
SDR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-261582161775Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G075700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278831e-111KJ727883.1 Zea mays clone pUT5976 AP2-EREBP transcription factor (EREB166) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959050.10.0ethylene-responsive transcription factor 1
TrEMBLK4A2J10.0K4A2J1_SETIT; Uncharacterized protein
STRINGSi033089m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-41ethylene response factor 1