PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.2G041900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NF-YA | ||||||||
Protein Properties | Length: 286aa MW: 30204.1 Da PI: 10.1107 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 94.2 | 1.5e-29 | 152 | 208 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVNaKQ+++Il+RR +Rak++++ ++ +++rkpylheSRh hAlrR+Rg+gGrF Sevir.2G041900.1.p 152 DEPVYVNAKQFNGILRRRLARAKAARDLRV-SRNRKPYLHESRHLHALRRARGTGGRF 208 79****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 3.7E-33 | 150 | 211 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.274 | 151 | 211 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.3E-28 | 153 | 208 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.1E-21 | 154 | 176 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.1E-21 | 185 | 208 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MNSSCARLSA IKHSFLCTFS LLQAAMGFHE HGPLGFQLTT DGGRGHGGGG ATAAPWWAAA 60 QGQGCAASKF PISSGDSDPW QDLKYHEPST AAIAAYPELH KYHAPFDLAL GQSMVWSNNA 120 DAGQGQSFGL YSPYGAQPMH GRVLLPPAIA ADEPVYVNAK QFNGILRRRL ARAKAARDLR 180 VSRNRKPYLH ESRHLHALRR ARGTGGRFLS TSSLAAGDQA PPLASTSLGG PEPTKGSAST 240 PARLQPGQVR QDVFLSPLIN MAGNGDGQAR WASAAPRACC DLLKV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 6e-18 | 152 | 210 | 2 | 61 | HAPB protein |
4g92_A | 6e-18 | 152 | 210 | 2 | 61 | HAPB protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 41 | 49 | GGRGHGGGG |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.2G041900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968217 | 4e-79 | EU968217.1 Zea mays clone 316709 nuclear transcription factor Y subunit A-10 mRNA, complete cds. | |||
GenBank | EU975023 | 4e-79 | EU975023.1 Zea mays clone 465284 nuclear transcription factor Y subunit A-10 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004955490.1 | 0.0 | nuclear transcription factor Y subunit A-10 isoform X1 | ||||
TrEMBL | A0A368PUS0 | 0.0 | A0A368PUS0_SETIT; Uncharacterized protein | ||||
STRING | Si032469m | 1e-151 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14663 | 21 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 2e-24 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.2G041900.1.p |