PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G037600.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TCP
Protein Properties Length: 455aa    MW: 47666.9 Da    PI: 10.0299
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G037600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1264.1e-39642142133
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssaseceaess 78 
                          g+kdrhsk++T++g RdRRvRls+ +a++f+dLqd+LG+d++sk+ieWL+++a +ai++l+++                           
  Sevir.2G037600.1.p  64 SGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGYDQPSKAIEWLIKAAAAAIDKLPSLdaaagfpahpasaaA------------ 142
                         689*************************************************************777766444333320............ PP

                 TCP  79 sssasnsssg..................kaaksaakskksqksaasalnlak.esrakarararertrekmrik 133
                           ++++++ +                  ++ + + +s+ s++s+ s+l+l++ esr kar+rarer++    ++
  Sevir.2G037600.1.p 143 --KDQHHRTPpdadadappdadhhqhqqQQLTRSGCSSTSETSKGSVLSLSRsESRVKARERARERSAAARDKD 214
                         ..2222222222223334444444444377777779999**************************998776655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.1E-4265210IPR005333Transcription factor, TCP
PROSITE profilePS5136932.18966124IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.992193213IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MEAVVAGGGE GRGSKRGRVK AADPGTEPDA KRRAAAPALA VTPSPWAPQQ QHPASRIYRV  60
SRASGGKDRH SKVYTAKGIR DRRVRLSVAT AIQFYDLQDR LGYDQPSKAI EWLIKAAAAA  120
IDKLPSLDAA AGFPAHPASA AAKDQHHRTP PDADADAPPD ADHHQHQQQQ LTRSGCSSTS  180
ETSKGSVLSL SRSESRVKAR ERARERSAAA RDKDKDPAAD DAATTGRRAA PTTSSAQAAS  240
FTELLTGMAA ATAAAGSAPA DHKQQQSPPW QPMAAPAIAD YIGFAQPRKA AGHAIAHSFA  300
SPAPHLANIA PIAMAPAQHF GLASGAVTVA SGGGEPHAEM TQFSFLQDHY MPVHAAPASG  360
PAGDYNLNFS MSSGLVGVNS RGTLQSNSQP HISGHHHQHH QLQRLSTPLD APNIPFLFSP  420
AAAVTTPATA ESQFAAFQLW NGFQHADMKE KGKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-3071125155Putative transcription factor PCF6
5zkt_B3e-3071125155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G037600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1904561e-171EU190456.1 Zea mays RFLP probe php20581 (CBM 2.10) genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679768.10.0LOW QUALITY PROTEIN: transcription factor PCF6
TrEMBLK3ZTE10.0K3ZTE1_SETIT; Uncharacterized protein
STRINGSi029871m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.27e-35TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2