PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G029800.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family TALE
Protein Properties Length: 353aa    MW: 38276.1 Da    PI: 6.524
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G029800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox308.9e-102783132055
                         HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Sevir.2G029800.1.p 278 YKWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 313
                         4679*****************************885 PP
2ELK37.84e-13233254122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK qLl+KYsgyL+sL+qEFs
  Sevir.2G029800.1.p 233 ELKYQLLKKYSGYLSSLRQEFS 254
                         9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.0E-2186130IPR005540KNOX1
PfamPF037906.9E-2287128IPR005540KNOX1
SMARTSM012561.5E-29133184IPR005541KNOX2
PfamPF037911.7E-23139182IPR005541KNOX2
PROSITE profilePS5121311.627233253IPR005539ELK domain
SMARTSM011881.2E-7233254IPR005539ELK domain
PfamPF037894.2E-10233254IPR005539ELK domain
PROSITE profilePS5007112.892253316IPR001356Homeobox domain
SuperFamilySSF466891.24E-19254327IPR009057Homeodomain-like
SMARTSM003894.4E-13255320IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.7E-28258317IPR009057Homeodomain-like
CDDcd000867.06E-13265317No hitNo description
PfamPF059209.8E-17273312IPR008422Homeobox KN domain
PROSITE patternPS000270291314IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDQSFGNLGA GGSSSGGSNS AKAAAASSSF LQLPLSTAAA AGAASPAGVA YYGAPLALLH  60
QAAGPSSSSQ SPYGRHAAEI SPAEAEAIKA KIVAHPQYSA LLAAYLDCQK VGAPPDVMER  120
LTAMAAKLDA RPPGRHEPRD PELDQFMEAY CNMLLKYREE LTRPIDEAME FLKRVEAQLD  180
SIAGSATGGG SSAARLSLAD GKSEGVGSSE DDMDPSGREN EPPEIDPRAE DKELKYQLLK  240
KYSGYLSSLR QEFSKKKKKG KLPKEARQKL LHWWELHYKW PYPSETEKIA LAESTGLDQK  300
QINNWFINQR KRHWKPSEDM PFVMMEGFHP QNAAALYMDG TFMADGMYRL GS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693}.
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10080693, ECO:0000269|PubMed:9869405}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G029800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0333610.0BT033361.1 Zea mays full-length cDNA clone ZM_BFb0146E21 mRNA, complete cds.
GenBankKJ7275690.0KJ727569.1 Zea mays clone pUT5429 HB transcription factor (HB132) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955415.10.0homeobox protein rough sheath 1
SwissprotO650341e-179KNOSC_ORYSI; Homeobox protein knotted-1-like 12
SwissprotO804161e-179KNOSC_ORYSJ; Homeobox protein knotted-1-like 12
TrEMBLA0A368PV500.0A0A368PV50_SETIT; Uncharacterized protein
STRINGPavir.Bb00225.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40613873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-98KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y, et al.
    Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants.
    EMBO J., 1999. 18(4): p. 992-1002
    [PMID:10022841]
  2. Ito Y,Eiguchi M,Kurata N
    KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice.
    Genesis, 2001. 30(4): p. 231-8
    [PMID:11536429]
  3. Nagasaki H,Sakamoto T,Sato Y,Matsuoka M
    Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15.
    Plant Cell, 2001. 13(9): p. 2085-98
    [PMID:11549765]
  4. Postma-Haarsma AD, et al.
    Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice.
    Plant Mol. Biol., 2002. 48(4): p. 423-41
    [PMID:11908517]
  5. Kuijt SJ, et al.
    Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice.
    Plant Mol. Biol., 2004. 55(6): p. 781-96
    [PMID:15604716]
  6. Yin H, et al.
    SUI-family genes encode phosphatidylserine synthases and regulate stem development in rice.
    Planta, 2013. 237(1): p. 15-27
    [PMID:22956125]