PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G029000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family AP2
Protein Properties Length: 648aa    MW: 67624.9 Da    PI: 7.4091
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G029000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.6e-16281340155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Sevir.2G029000.1.p 281 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 340
                         78*******************988886678446*************************98 PP
2AP247.54.5e-15385434355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GV+++++ grW A+I  +s    +k  +lg+f t eeAa+a++ a+ k++g
  Sevir.2G029000.1.p 385 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 434
                         9***************999754...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.8E-13281340IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-16281349IPR016177DNA-binding domain
CDDcd000186.77E-20281348No hitNo description
Gene3DG3DSA:3.30.730.104.6E-16282349IPR001471AP2/ERF domain
SMARTSM003802.0E-29282354IPR001471AP2/ERF domain
PROSITE profilePS5103219.203282348IPR001471AP2/ERF domain
PRINTSPR003674.9E-6283294IPR001471AP2/ERF domain
CDDcd000189.81E-23383444No hitNo description
SuperFamilySSF541711.44E-17383443IPR016177DNA-binding domain
PROSITE profilePS5103219.19384442IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-18384442IPR001471AP2/ERF domain
SMARTSM003802.9E-33384448IPR001471AP2/ERF domain
PfamPF008479.5E-10385434IPR001471AP2/ERF domain
PRINTSPR003674.9E-6424444IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 648 aa     Download sequence    Send to blast
MTNNSSNSNG NGTNAAASGW LGFSLSPHMT SAMDDHQQHQ HHVQQQQQHG LFFPSVTAAA  60
AAYGLGLGAG DAAAVAASAP SYYTPQLASM PLKSDGSLCI MEALRRSDQD HHGPKLEDFL  120
GAAQSQAMAL SLDNAAAAAA ASSFYYYGGG AGTGGHHHGF LQPCADLYGG PSAAALVADD  180
EATAAATAMA SWVAARASAA ESGVHSAAAA GHQHHHHALA LSMSSGSLSS CVTAHPGEYG  240
MVAAAGAGAM VDGGRKRGVA AGQKQPVHHR KSIDTFGQRT SQYRGVTRHR WTGRYEAHLW  300
DNSCKKEGQT RKGRQVYLGG YDMEEKAARA YDLAALKYWG PSTHINFPLE DYQEELEEMK  360
NMTRQEYVAH LRRKSSGFSR GASMYRGVTR HHQHGRWQAR IGRVSGNKDL YLGTFSTQEE  420
AAEAYDIAAI KFRGLNAVTN FDITRYDVDK IMASNTLLPG ELARRKKDDE VAAIAPADGG  480
AGGVTTAALA AAAHQAANGS AAAADTWKVA AALAAAEHGH GAHHHHHDVL SGAEAFSVLH  540
DLVTAADGGG HHGAGAAQHM PMSSASSLVT SLGNSREGSP DRGGGLSMLF SKPPAPQQQQ  600
QQQAANNKPM MSPLMPLGSW ASPASARGAA AAVSIAHMPV FAAWTDA*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G029000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0882630.0BT088263.1 Zea mays full-length cDNA clone ZM_BFc0105N21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699301.10.0AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z020.0CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A368PV400.0A0A368PV40_SETIT; Uncharacterized protein
STRINGSi029185m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-127AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]