PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G021000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 443aa    MW: 45758.8 Da    PI: 8.3296
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G021000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM63.85.2e-20211563128
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratk..sgyWkat 86 
                         p f  hP+d  lv+ yL++ v++   +   +++ +d+y +eP dL +      ++ +e+ wyf s+ ++k+++g+rk+r+++  +g W+  
  Sevir.2G021000.1.p  21 PAFDSHPSDVVLVKSYLRPWVAQGVRPPGAFVHAADLYAAEPGDLARrhraaVARDGERAWYFLSPLRTKSPRGRRKSRTVEggTGWWHGE 111
                         67888*****************999888678**************84355544444788********************88844667**** PP

                 NAM  87 gkdkevlsk..kgelvglkktLvfy.kgrapkgektdWvmheyrl 128
                            k+vl+   ++++vg ++++ f  +g +  +++t W+m e rl
  Sevir.2G021000.1.p 112 AGPKPVLDPldGRRKVGYRQSFSFMrRGADGAPVRTGWIMLELRL 156
                         *******99989999**********567888899*******9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100533.04619184IPR003441NAC domain
SuperFamilySSF1019412.48E-2919184IPR003441NAC domain
PfamPF023659.5E-1221156IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MLRRPPPVPV PRSSLAAAAA PAFDSHPSDV VLVKSYLRPW VAQGVRPPGA FVHAADLYAA  60
EPGDLARRHR AAVARDGERA WYFLSPLRTK SPRGRRKSRT VEGGTGWWHG EAGPKPVLDP  120
LDGRRKVGYR QSFSFMRRGA DGAPVRTGWI MLELRLHDDD DDGEGGGGLG DQLEGLVLCK  180
VYRSPRHPET AAAPDDGDEE SCAAAETAPG GRHSNAADSD GSSDASLVAV VEPGGKRKAY  240
DDEGSSAATP RRHIKNADGE TSGAAAALMA PGLKKQAADG ENEVYGAATS AAPGIKEKAA  300
ADDENVISGA TTAAARGNEE GKKRAADGDE DSSASTTARK RARTAGDEGP GAASASALAP  360
ALMRKSAVIA LAPAPQQLLC PQCGFQIGAL QAVVAPAKST SETGTRIAQA GAPQGGGRMG  420
DASGKDHSTH RLVLRFSDPK QA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-132118217166Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G021000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680448.10.0NAC domain-containing protein 71-like
TrEMBLA0A368PU190.0A0A368PU19_SETIT; Uncharacterized protein
STRINGSi032755m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1966278
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.14e-12NAC domain containing protein 94