PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.1G382800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 229aa MW: 23239.1 Da PI: 10.7658 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 126 | 4.1e-39 | 30 | 127 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec..eaesssssasnsssg.. 88 a++k +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ +++s +ss+s+ + + Sevir.1G382800.1.p 30 AVRKAPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFStsSPSSLRSSSSQTTTApf 120 789*************************************************************999998886655555555554433345 PP TCP 89 ......k 89 + Sevir.1G382800.1.p 121 ilgkrvR 127 5554441 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.3E-33 | 36 | 115 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.209 | 36 | 90 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence Send to blast |
MTTRPAQGGA AADKQLVPAS NGNGNGNALA VRKAPSKDRH SKVDGRGRRI RMPIICAARV 60 FQLTRELGHK SDGQTIEWLL RQAEPSIIAA TGTGTTPASF STSSPSSLRS SSSQTTTAPF 120 ILGKRVRGAD DADAAEPTVA APAPGFWALP ARADFGQLWS FAAAPEMMVA AAAAAAAPAM 180 AGEASAARVG NYLPMAQGNL NLLASFSGGP APTAATATVG RAEEETAR* |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00524 | DAP | Transfer from AT5G23280 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.1G382800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK240798 | 1e-114 | AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence. | |||
GenBank | AP004776 | 1e-114 | AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04. | |||
GenBank | AP014958 | 1e-114 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 1e-114 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004954492.1 | 1e-161 | transcription factor TCP7-like | ||||
Swissprot | Q9FMX2 | 2e-76 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | A0A368PTE0 | 1e-160 | A0A368PTE0_SETIT; Uncharacterized protein | ||||
STRING | OMERI02G35320.1 | 1e-95 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1941 | 33 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G23280.1 | 5e-46 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.1G382800.1.p |