PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G381300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | MYB | ||||||||
Protein Properties | Length: 148aa MW: 17023.3 Da PI: 12.066 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.4 | 9.4e-15 | 26 | 71 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +WT+eEd +l ++ +++G ++W+++a+ + +gR+ qc++rw+ +l Sevir.1G381300.1.p 26 AWTAEEDARLERLAREHGCRHWRRVAASLLTGRSSRQCRDRWRHHL 71 7*****************************************9886 PP | |||||||
2 | Myb_DNA-binding | 21.6 | 5.2e-07 | 79 | 122 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++T+ +d+ l+++ ++ g+ W+ I+r + gRt + rw+ ++ Sevir.1G381300.1.p 79 PFTARDDDDLARLYVRHAGR-WRDISRAVH-GRTSRAMRRRWRELR 122 79****************99.*********.***********9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.323 | 16 | 75 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-11 | 23 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.24E-22 | 24 | 118 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.5E-17 | 26 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.47E-10 | 26 | 71 | No hit | No description |
Pfam | PF00249 | 3.1E-13 | 26 | 71 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.876 | 72 | 122 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0049 | 76 | 124 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00795 | 79 | 121 | No hit | No description |
Pfam | PF13921 | 1.1E-6 | 80 | 124 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.3E-9 | 82 | 121 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MASASAAAGL APSAAAPVLR IRPPPAWTAE EDARLERLAR EHGCRHWRRV AASLLTGRSS 60 RQCRDRWRHH LARDVYHRPF TARDDDDLAR LYVRHAGRWR DISRAVHGRT SRAMRRRWRE 120 LRDSDAFLSK LWRPRPPPPA PWTDADA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3osf_A | 4e-14 | 27 | 123 | 14 | 108 | MYB21 |
3osf_D | 4e-14 | 27 | 123 | 14 | 108 | MYB21 |
3osg_A | 4e-14 | 27 | 123 | 14 | 108 | MYB21 |
3osg_D | 4e-14 | 27 | 123 | 14 | 108 | MYB21 |
3zqc_A | 5e-14 | 27 | 119 | 5 | 96 | MYB3 |
3zqc_D | 5e-14 | 27 | 119 | 5 | 96 | MYB3 |
3zqc_G | 5e-14 | 27 | 119 | 5 | 96 | MYB3 |
3zqc_J | 5e-14 | 27 | 119 | 5 | 96 | MYB3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G381300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012701216.1 | 5e-97 | transcription factor MYB30 | ||||
TrEMBL | K3Z0K0 | 1e-94 | K3Z0K0_SETIT; Uncharacterized protein | ||||
STRING | Si020066m | 2e-95 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12569 | 20 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 3e-15 | myb domain protein r1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G381300.1.p |