PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G379400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family C2H2
Protein Properties Length: 347aa    MW: 36056.8 Da    PI: 7.6505
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G379400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00059140162123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C+k+F++   L  H  +H
  Sevir.1G379400.1.p 140 YECKTCNKCFPTFQALGGHRASH 162
                         99**********99999998887 PP
2zf-C2H211.70.0008241263123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  F +   L  H+r+H
  Sevir.1G379400.1.p 241 HECSICGAEFASGQALGGHMRRH 263
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.0E-11139164IPR007087Zinc finger, C2H2
SuperFamilySSF576672.34E-9139162No hitNo description
PROSITE profilePS5015710.201140167IPR007087Zinc finger, C2H2
SMARTSM003550.094140162IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280142162IPR007087Zinc finger, C2H2
SuperFamilySSF576672.34E-9236263No hitNo description
PfamPF139121.5E-12240264IPR007087Zinc finger, C2H2
SMARTSM003550.016241263IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64241268IPR007087Zinc finger, C2H2
PROSITE patternPS000280243263IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MHTPEAVEAP PPLLVMPTSS TEHSAGELDR HHPQPPLTVV KRKRTKRPRH HPPASSSASS  60
SESTTTEEED MAHCLILLAQ GAGGGSSGAH AAVDSKHSPS LSPPPAAAPP APAKSERYTS  120
RKYTEAVTTA DGVKAGFYVY ECKTCNKCFP TFQALGGHRA SHKKPRIAGT DDEIVLTTTT  180
TTTTIKQQQK PPMMATASPA PAPAPLLQPQ TTIDVAVFPD VTTALSLNSV AMTTTTKLRV  240
HECSICGAEF ASGQALGGHM RRHRPLNAPE RAVTAIAAAA DTTKKEAGSA GINLELDLNL  300
PAPSDEEALS LPAAAPPAVV LGLGQFSNGN KGGLMLTASA LVDCHY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G379400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039891e-54AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06.
GenBankAP0040261e-54AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04.
GenBankAP0149581e-54AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-54CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954457.10.0zinc finger protein ZAT5
TrEMBLA0A368PTD50.0A0A368PTD5_SETIT; Uncharacterized protein
STRINGSi020219m1e-166(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.13e-36C2H2 family protein