PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G366200.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NAC
Protein Properties Length: 290aa    MW: 31929.9 Da    PI: 7.1706
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G366200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM163.29.9e-51101411128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         lppGfrF P+deelv++yL+ kv++++l  +   + evd++++ePw+Lp  +k +++ewyfFs rd+kyatg r+nratksgyWkatgkd+
  Sevir.1G366200.1.p  10 LPPGFRFYPSDEELVCHYLHGKVANERLAGAGGaMVEVDLHTHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATKSGYWKATGKDR 100
                         79*************************7765545***************87788999********************************** PP

                 NAM  91 evlsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + +    ++++vg++ktLvfy+grap+g kt+Wvmhe+r+
  Sevir.1G366200.1.p 101 VIRNPkaaGRAVVGMRKTLVFYRGRAPNGIKTSWVMHEFRM 141
                         **9987877888***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-607160IPR003441NAC domain
PROSITE profilePS5100557.65810160IPR003441NAC domain
PfamPF023651.3E-2711141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGLRDIELTL PPGFRFYPSD EELVCHYLHG KVANERLAGA GGAMVEVDLH THEPWELPDV  60
AKLSTNEWYF FSFRDRKYAT GLRTNRATKS GYWKATGKDR VIRNPKAAGR AVVGMRKTLV  120
FYRGRAPNGI KTSWVMHEFR MENPHTPPKE DWVLCRVFYK KKADAMDYAM DNERDVAMPH  180
GADHPGYSPP FPALGSGHYH LPPPSSDHHG GGAGAGSLND FPAMALLHHQ HSSIFDLHGQ  240
PHDGGSNVLA AAAGSRDGGA AGDQCGSGVL MDLGLDEHYN YNYNSLMQM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-4711654169NO APICAL MERISTEM PROTEIN
1ut4_B2e-4711654169NO APICAL MERISTEM PROTEIN
1ut7_A2e-4711654169NO APICAL MERISTEM PROTEIN
1ut7_B2e-4711654169NO APICAL MERISTEM PROTEIN
3swm_A2e-4711657172NAC domain-containing protein 19
3swm_B2e-4711657172NAC domain-containing protein 19
3swm_C2e-4711657172NAC domain-containing protein 19
3swm_D2e-4711657172NAC domain-containing protein 19
3swp_A2e-4711657172NAC domain-containing protein 19
3swp_B2e-4711657172NAC domain-containing protein 19
3swp_C2e-4711657172NAC domain-containing protein 19
3swp_D2e-4711657172NAC domain-containing protein 19
4dul_A2e-4711654169NAC domain-containing protein 19
4dul_B2e-4711654169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G366200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3640021e-148AK364002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020L05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954303.10.0NAC domain-containing protein 92
SwissprotQ9FLJ27e-60NC100_ARATH; NAC domain-containing protein 100
TrEMBLK3YUM10.0K3YUM1_SETIT; Uncharacterized protein
STRINGSi017967m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.13e-80NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]