PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G358200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ARR-B | ||||||||
Protein Properties | Length: 680aa MW: 73489.5 Da PI: 6.6894 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.1 | 2e-28 | 212 | 265 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl Sevir.1G358200.1.p 212 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKRILELMNVDKLTRENVASHLQKYRL 265 79*******************.********************************8 PP | |||||||
2 | Response_reg | 78.3 | 2.7e-26 | 23 | 131 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 vl vdD+p+ +++l+++l++ +y +v+++ ++ al++l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++++ge +++ + Sevir.1G358200.1.p 23 VLAVDDDPVCLKVLETLLRRCQY-HVTTTNQAAIALRMLRENRdlFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSGNGETKTVMKG 111 799********************.***************99999********************87754.558****************** PP HHTTESEEEESS--HHHHHH CS Response_reg 90 lkaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ eel++ Sevir.1G358200.1.p 112 ITHGACDYLLKPVRLEELRN 131 ******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 6.1E-187 | 1 | 679 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 2.7E-36 | 20 | 147 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.6E-42 | 20 | 144 | No hit | No description |
SMART | SM00448 | 1.3E-31 | 21 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.719 | 22 | 137 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.2E-23 | 23 | 132 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.93E-27 | 24 | 136 | No hit | No description |
SuperFamily | SSF46689 | 4.48E-20 | 209 | 269 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.683 | 209 | 268 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.8E-30 | 210 | 270 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-25 | 212 | 265 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-6 | 214 | 264 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 680 aa Download sequence Send to blast |
MRPEERNGAM GRVRDQFPAG MRVLAVDDDP VCLKVLETLL RRCQYHVTTT NQAAIALRML 60 RENRDLFDLV ISDVHMPDMD GFKLLELVGL EMDLPVIMLS GNGETKTVMK GITHGACDYL 120 LKPVRLEELR NIWQHVVRRK FSNRERANVD GYEECNKPSN ADFDNVHSQI TCGSPDQSGR 180 PSKKRKEYHS EEEDEGEESN GQENDDSSTP KKPRVVWSVE LHRKFVAAVN QLGIDKAVPK 240 RILELMNVDK LTRENVASHL QKYRLYLKRL SAVASQQACI VAALGGSDPF MHMGAFEGLQ 300 GYQAFTSSAP LSSFSPQGLL NRNNPTSFGI QGMCASRPIQ IATGNSTISH SVGDANKYHL 360 SFPGTSNRPG NLAQGLATSV GQVQVPQKWI QEETHDLSTI ISGNGLVNGV PGTLRSATNS 420 PLLQQDLVEC RHAKIVIQPS SSVNSEHLEC TAGVSSSLMD SHVSQQSGVS LSAFSASALP 480 MNGSFGSTNV AKLGATSSGG TNICSSNGLR VARDNEVGAT SLGSVILLPP DTAQNQKYLN 540 FGGGSSLRHN MDGGNRDSVL DSKLVWSSLP TSQPPSTIRS HHPLSQRSNN GTLGVKMIEQ 600 TSASASTAAP QTKFDMFTSG DILTAKNALD SSFPRLNSEL SSSSCSFDGL LNSIIKVEKD 660 DTSFNDDLGC DFYSLGACI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-25 | 208 | 271 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G358200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004954220.1 | 0.0 | two-component response regulator ORR23 | ||||
Swissprot | Q6K8X6 | 0.0 | ORR23_ORYSJ; Two-component response regulator ORR23 | ||||
TrEMBL | K3YQK3 | 0.0 | K3YQK3_SETIT; Two-component response regulator | ||||
STRING | Si016546m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1856 | 38 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-115 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G358200.1.p |
Publications ? help Back to Top | |||
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