PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G341500.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family GeBP
Protein Properties Length: 324aa    MW: 35288.8 Da    PI: 4.4348
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G341500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57345.62e-14144233398
              DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlve.KirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                         fqr ws +De+ +L +l   + ++g+     +da+  ++ + ++   s+  l++ K+++LK+++    +k   g+    sk+hd+  f+ls
  Sevir.1G341500.1.p 144 FQRTWSTDDEVRILEALAAHRREHGTL--PQVDALAATLAGTLDNSGSSIALLQgKLKSLKRRYSLAANK---GER--PSKDHDRRLFDLS 227
                         9************************66..56789999******999999887644************999...555..5799********* PP

              DUF573  93 kkiWgs 98 
                         k++Wgs
  Sevir.1G341500.1.p 228 KSVWGS 233
                         ****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045047.5E-20144232IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MAPKRSAPPP PPPPAAASDE ETASGSGSEE SEEEEEEEIA YSPPPAAPKA MAPPPPQKGQ  60
ESDEDEDEEE EEEEEEENHV PPPLATKNPS PPPPNREESE SSGDEEEEET DDEAPQAKPA  120
PNQEAEGKGA KPSSSEDKKP GAPFQRTWST DDEVRILEAL AAHRREHGTL PQVDALAATL  180
AGTLDNSGSS IALLQGKLKS LKRRYSLAAN KGERPSKDHD RRLFDLSKSV WGSTTAAANG  240
GARREVAEMC ELYPYLAEEV KALQKAHPGL FKREFGMIDD DKARALDTKI KRQRLHQAKV  300
IQRRCDLIKE VTKTLIDLVE STI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197203LKSLKRR
2288293KIKRQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G341500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004954058.21e-150uncharacterized protein LOC101755591
TrEMBLK3YU510.0K3YU51_SETIT; Uncharacterized protein
STRINGSi017797m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67292737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.11e-09DNA-binding storekeeper protein-related transcriptional regulator