PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G341000.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family WRKY
Protein Properties Length: 565aa    MW: 59863.8 Da    PI: 4.8988
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G341000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.3e-30314373159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dg++WrKYGqK+ kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Sevir.1G341000.1.p 314 MNDGCQWRKYGQKVAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILVTTYEGTHNHP 373
                         58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-31299375IPR003657WRKY domain
SuperFamilySSF1182902.88E-27307375IPR003657WRKY domain
PROSITE profilePS5081128.529309375IPR003657WRKY domain
SMARTSM007741.4E-37314374IPR003657WRKY domain
PfamPF031061.0E-26315373IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 565 aa     Download sequence    Send to blast
MSSKKKRAAA IDLSVEAERR EEEDRSAGDR RDKDGGVGKK EEQFKEQEEA PPKEETGGEE  60
KVVEVVVDQG GDGTKEEIKY RTQQGEEMEE DKQSEEGHGD DESDGAENRA DGKHVVEASG  120
DGDGDDNHTT MVQDEVSAMQ EEMEKMKEEN RMLRRVVDRT VRDYYELQMK LAAYQQQPAD  180
EPKEPEVFLS LGAAAAATTG GFPEPKRKEQ AARRPSVGSD DTDDGKEDLG LSLSLRASSS  240
YEEEKMEAAH DFDGGASVAG ADGKAKGYAL LESSKLGAPA AGDLATAGIT SQSVNPANRK  300
TRVSVRVRCQ GPTMNDGCQW RKYGQKVAKG NPCPRAYYRC TVAPGCPVRK QVQRCLEDMS  360
ILVTTYEGTH NHPLPVGATA MASTTSAAAT FMLLSSTSSS SSISEAAGGG GSAAPPYYLS  420
PYLLNSTSHH SSASPLLSAP SSMPSAAPGS ASGMQHLNLF GHSSMLAHQQ APHLKYPWSS  480
SEPSHGGSGG LAGSKRPFWS TAGDEKAATL PDNVGAVMSD PNKFSVAIAA AINSFMGKDS  540
GKDGESSSSK SSNKWGVVES LPPP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-213143751777Probable WRKY transcription factor 4
2lex_A3e-213143751777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G341000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681574.10.0probable WRKY transcription factor 9
TrEMBLK3YR970.0K3YR97_SETIT; Uncharacterized protein
STRINGSi016791m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80223446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.16e-50WRKY DNA-binding protein 9