PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.1G340000.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

GeBP

Protein Properties

Length: 300aa MW: 32652.9 Da PI: 10.5207

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.1G340000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	35.7	2.4e-11	117	181	6	69
DUF573 6 lwseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkv 69 ws+ De +lL + + f++++g p d+ ++++ + +sis ++ + + K++rLK Kf++ Sevir.1G340000.1.p 117 KWSDADEFTLLAAAVAFRERNGHAPRLpDMAELFDSICDSISPHIDQFMVYYKMKRLKSKFQHSD 181 5********************98877*******************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	8.5E-10	116	180	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MSSRRPSASA MDADAPPSPP RSKKRPSRRS DSDWSPNPSP RGSPTEHKRR RRTSAESAAL 60 ALTAVAARAS AAGSDAGRGG ARRSQRPRRR TARADGGDGA IQMLGAAAAR VGVQKHKWSD 120 ADEFTLLAAA VAFRERNGHA PRLPDMAELF DSICDSISPH IDQFMVYYKM KRLKSKFQHS 180 DGPRDRRLRN MCSVLWGVGV VPSSEDDSDA GERSGVPDAA AMMPVVAEVL GEYWKTNERV 240 MAGVPLEKGL SLLGKKEGRL LETKWRQQLD EEMQSQMRQH DLAKEVCGLL TDAIKGLGP*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.1G340000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216353	0.0	AC216353.5 Zea mays BAC clone CH201-194K18 from chromosome 5, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004954046.2	0.0	uncharacterized protein LOC101785158
TrEMBL	K3YUH9	0.0	K3YUH9_SETIT; Uncharacterized protein
STRING	Si017925m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2682	27	63

Link Out ? help Back to Top
Phytozome	Sevir.1G340000.1.p