PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G337500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 257aa MW: 27114.6 Da PI: 7.4736 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 3.8e-20 | 113 | 163 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GVr+++ +g+W+AeIrdp + r +lg+f+tae+Aa+a++ a+ +++g Sevir.1G337500.1.p 113 SKYRGVRRRP-WGKWAAEIRDP-----HraVRKWLGTFDTAEDAARAYDIAAIEFRG 163 89********.**********7.....338************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.5E-12 | 113 | 163 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-23 | 113 | 173 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.63E-31 | 113 | 173 | No hit | No description |
SMART | SM00380 | 4.2E-37 | 114 | 177 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.765 | 114 | 171 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.7E-31 | 114 | 171 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-11 | 115 | 126 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.9E-11 | 137 | 153 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MAKRAGGFHL PNAEQENSLL LRALISVVSG DNAVPALLPE EAEAPVVEAP APCTCTTCGA 60 NGCAAGGCEL LAVTGIGSSS DSDDGGECSA SASRAAITGG VGKLRRRQRG RVSKYRGVRR 120 RPWGKWAAEI RDPHRAVRKW LGTFDTAEDA ARAYDIAAIE FRGRRAKLNF PADVTPAPAP 180 SWAPTSTYHH HLPQPLPESL HETCGSNASS PVQVALVAAA PAGQHGARLV PKERDIWDGL 240 NEIMMMDDGS FWSSMP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-20 | 114 | 175 | 14 | 76 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 120 | RRRQRGRVSKYRGVRRR |
2 | 105 | 121 | RRQRGRVSKYRGVRRRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G337500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU953802 | 6e-50 | EU953802.1 Zea mays clone 1446523 ethylene-responsive element binding protein 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004954022.1 | 0.0 | ethylene-responsive transcription factor ERF112 | ||||
TrEMBL | K3YV48 | 0.0 | K3YV48_SETIT; Uncharacterized protein | ||||
STRING | Si018144m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 5e-22 | ethylene response factor 110 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G337500.1.p |