PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G329800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | ERF | ||||||||
Protein Properties | Length: 331aa MW: 35298.4 Da PI: 6.8864 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 3.8e-20 | 161 | 210 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++a+ +l+g Sevir.1G329800.1.p 161 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRG 210 59******9.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.60E-31 | 160 | 220 | No hit | No description |
SuperFamily | SSF54171 | 1.24E-22 | 161 | 219 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.3E-37 | 161 | 224 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-32 | 161 | 219 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.117 | 161 | 218 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-13 | 162 | 210 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-11 | 162 | 173 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.6E-11 | 184 | 200 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MAAAIDMYKY YNTSAHQIAA SSSSDQELAK ALEPFITSAS SSSSSPYHYY SSSSMTQDSY 60 MPTPSYATFA TSPLPTAAAT SSSSFSQLPP LYSSPYAASA ASGVTGPMGL NQLGPAQIQQ 120 IQAQFMMQQQ QRGLHAAFLG PRAQPMKQSG SPPLAPAQSK LYRGVRQRHW GKWVAEIRLP 180 KNRTRLWLGT FDTAEDAALA YDKAAFRLRG DMARLNFPAL RRGGAHLAGP LHASVDAKLT 240 AICQSLAGSK SGSPDAESSA ASPPDSPKCS ASTEGEEESV SAGSPPSPPL APPVPEMAKL 300 DFTEAPWDET EAFHLRKYPS WEIDWDSILS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 157 | 218 | 1 | 63 | ATERF1 |
3gcc_A | 2e-21 | 157 | 218 | 1 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00026 | PBM | Transfer from AT1G78080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G329800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT088163 | 0.0 | BT088163.1 Zea mays full-length cDNA clone ZM_BFc0039L03 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953948.1 | 0.0 | ethylene-responsive transcription factor RAP2-4 | ||||
Swissprot | Q8H1E4 | 2e-65 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | K3YU14 | 0.0 | K3YU14_SETIT; Uncharacterized protein | ||||
STRING | Si017760m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39780.1 | 9e-44 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G329800.1.p |
Publications ? help Back to Top | |||
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