PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sevir.1G324700.1.p

Organism

Setaria viridis

Taxonomic ID

4556

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria

Family

Nin-like

Protein Properties

Length: 181aa MW: 20644.6 Da PI: 10.0245

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sevir.1G324700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.9	3.6e-27	36	86	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k +++e +s++Fs+pi++AA+eL+v++T LK++CR++GI+RWPhRk+ksl Sevir.1G324700.1.p 36 AKALTFELVSQHFSMPIEQAARELNVGVTGLKKRCRELGIPRWPHRKVKSL 86 589**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.189	21	106	IPR003035	RWP-RK domain
Pfam	PF02042	6.3E-23	39	86	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MSSLDTAREK SRKLDYDSVE QATQVQGRPA GGGSEAKALT FELVSQHFSM PIEQAARELN 60 VGVTGLKKRC RELGIPRWPH RKVKSLQTLI DNVQELGKET EEVDGHLTRI VVERLQQTKK 120 LIEERPEVPL DEKTKQLSQA CYKENWKRKR GSRPGAGLRS DLDAQRRWPW FMTCLLHNLN 180 *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sevir.1G324700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004955210.1	1e-107	protein RKD1
Swissprot	Q9M9U9	2e-36	RKD1_ARATH; Protein RKD1
TrEMBL	A0A368PRG9	1e-106	A0A368PRG9_SETIT; Uncharacterized protein
STRING	Si020172m	7e-70	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	9e-39	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Sevir.1G324700.1.p