PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G320800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | E2F/DP | ||||||||
Protein Properties | Length: 445aa MW: 49157.6 Da PI: 9.3652 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 72.6 | 4.3e-23 | 58 | 123 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 rkeksL+ll+++f+ l+ + + + + l+e+ak+L v +rRRiYDi+NVLe+++++ +k+kn+++w+g Sevir.1G320800.1.p 58 RKEKSLGLLCSNFMVLYDRDDVESIGLDEAAKSL---GV--ERRRIYDIVNVLESVGILVRKAKNRYTWIG 123 79****************9999************...**..****************************98 PP | |||||||
2 | E2F_TDP | 80.5 | 1.5e-25 | 202 | 282 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwkg 71 rkeksL+lltq+f+kl+ + e ++++l+e+ak L+ e ++++k+RR+YDi+NVL++lnliek ++k+++rw g Sevir.1G320800.1.p 202 RKEKSLGLLTQNFVKLFLTMEVDTISLDEAAKLLLGEgheetNMRTKVRRLYDIANVLSSLNLIEKiqqgdTRKPAFRWLG 282 79*****************************************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 8.1E-26 | 54 | 124 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 6.81E-16 | 57 | 122 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 3.5E-28 | 58 | 123 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.6E-20 | 59 | 123 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 5.4E-23 | 199 | 283 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 3.6E-32 | 202 | 282 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 2.1E-20 | 203 | 282 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 6.94E-13 | 204 | 283 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MLMAMAASSS SVAEVAVAAA AAAAMESALP QHQQQEARPR PMLAGGGAAK SRHHAYSRKE 60 KSLGLLCSNF MVLYDRDDVE SIGLDEAAKS LGVERRRIYD IVNVLESVGI LVRKAKNRYT 120 WIGFDGVPMA LRELKERALR EKSGLAPLQT EQQSASTMSD DEDDDKLGNP DGDIENEKLS 180 QTMDNPSDKP GAPRCRLRSD HRKEKSLGLL TQNFVKLFLT MEVDTISLDE AAKLLLGEGH 240 EETNMRTKVR RLYDIANVLS SLNLIEKIQQ GDTRKPAFRW LGRAAKPSTE NSVTVAVPPP 300 GKSVSNKRAF GTDITNTDML RSNLHSKIQK KAKLGERGDI LKNCKVAVQS RLGQGKNNGF 360 VYGPFHPAGA RKHELDGGNK PGQRERAEDW ESLSVSFRPQ YQNQALGDLF AHYVEAWKTW 420 YSEFAQGSNS MQQHLGQSVV NHFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yo2_A | 3e-37 | 57 | 274 | 3 | 228 | Transcription factor E2F8 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G320800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022682371.1 | 0.0 | E2F transcription factor-like E2FE | ||||
TrEMBL | A0A368PRM9 | 0.0 | A0A368PRM9_SETIT; Uncharacterized protein | ||||
STRING | Si019635m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3185 | 38 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48160.2 | 1e-102 | DP-E2F-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G320800.1.p |