PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G314800.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CO-like
Protein Properties Length: 442aa    MW: 47458.4 Da    PI: 7.2025
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G314800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.36.5e-081859338
            zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                        +r C+ + + +++++C  ++ +lC+ C  + H+       H+
  Sevir.1G314800.2.p 18 ARACDSCLRRRARWYCAADDAFLCQGCDASVHSAnplarrHE 59
                        578*****************************6567777776 PP
2CCT67.24.5e-23381424144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++
  Sevir.1G314800.2.p 381 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRP 424
                         9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.3E-111663IPR000315B-box-type zinc finger
PROSITE profilePS5011910.681663IPR000315B-box-type zinc finger
PfamPF006431.3E-61960IPR000315B-box-type zinc finger
CDDcd000219.41E-92163No hitNo description
PfamPF062035.1E-18381423IPR010402CCT domain
PROSITE profilePS5101715.993381423IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MSGSKAAAAG AAVGGKAARA CDSCLRRRAR WYCAADDAFL CQGCDASVHS ANPLARRHER  60
LRLRPTSPMH PLSAFEGGAP STSTLMSKKR QQVAPAAWSR RKARTRRPQV KSVGQLLSRK  120
LIVVPEMTVE SSEERKAEDE ESEEAAEEQL LYCVPTFDRA LAELCSPPPI DDDSPAAAPC  180
CREDADDSNV EHAKAAPVAA ESPVQQLPDS FAGFGPTDAE LREFAADMEA LLGQGLDDGN  240
QLDESFYMES LGLMTTPAED GGRVLKMEPD SIVVSHGDMG ALGRSPAEVK PEESAEKASA  300
ASNGVAADAQ FLKRSLDLRL NYEAVIESWG SSPWTDGQRP DVQLDDFWPH HAHHSGVWMA  360
GGGRLGGEAL TPRLGMGGGG REARVSRYRE KRRTRLFAKK IRYEVRKLNA EKRPRMKGRF  420
VKRPAAGGAG PAAAAAPCAV T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1391407RRTRLFAKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G314800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953821.30.0zinc finger protein CONSTANS-LIKE 16 isoform X2
TrEMBLK3YSH20.0K3YSH2_SETIT; Uncharacterized protein
STRINGSi017124m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73870.14e-49B-box type zinc finger protein with CCT domain