PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G314800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | CO-like | ||||||||
Protein Properties | Length: 466aa MW: 50222.3 Da PI: 5.9109 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.2 | 7e-08 | 18 | 59 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +r C+ + + +++++C ++ +lC+ C + H+ H+ Sevir.1G314800.1.p 18 ARACDSCLRRRARWYCAADDAFLCQGCDASVHSAnplarrHE 59 578*****************************6566777776 PP | |||||||
2 | CCT | 67.1 | 4.8e-23 | 405 | 448 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++ Sevir.1G314800.1.p 405 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRP 448 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 3.3E-11 | 16 | 63 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.68 | 16 | 63 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.4E-6 | 19 | 60 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.73E-8 | 21 | 63 | No hit | No description |
Pfam | PF06203 | 5.4E-18 | 405 | 447 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.993 | 405 | 447 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MSGSKAAAAG AAVGGKAARA CDSCLRRRAR WYCAADDAFL CQGCDASVHS ANPLARRHER 60 LRLRPTSPMH PLSAFEGGAP STSTLMSKKR QQVAPAAWSR RKARTRRPQV KSVGQLLSRK 120 LIVVPEMTVE SSEERKAEDE ESEEAAEEQL LYCVPTFDRA LAELCSPPPI DDDSPAAAPC 180 CREDADDSNV EHAKAAPVAA ESPVQQLPDS FAGFGPTDAE LREFAADMEA LLGQGLDDGN 240 QLDESFYMES LGLMTTPAED GGRVLKMEPD SIVVSHGDMG ALGRSPAEVK PEESAEVLDI 300 DFNCSSPTVI DNDEDYCFEQ KASAASNGVA ADAQFLKRSL DLRLNYEAVI ESWGSSPWTD 360 GQRPDVQLDD FWPHHAHHSG VWMAGGGRLG GEALTPRLGM GGGGREARVS RYREKRRTRL 420 FAKKIRYEVR KLNAEKRPRM KGRFVKRPAA GGAGPAAAAA PCAVT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 415 | 431 | RRTRLFAKKIRYEVRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G314800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014661075.1 | 0.0 | zinc finger protein CONSTANS-LIKE 16 isoform X1 | ||||
TrEMBL | K3YS80 | 0.0 | K3YS80_SETIT; Uncharacterized protein | ||||
STRING | Si017124m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3283 | 30 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 3e-61 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G314800.1.p |