PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sevir.1G314500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
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Family | NAC | ||||||||
Protein Properties | Length: 396aa MW: 44358.6 Da PI: 4.9722 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 99.2 | 5.7e-31 | 46 | 185 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkk..kvegkkleleev.ikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 lp+G++F+P+d+el+++ L+k kv k++++ + i+++d +++++P++Lp vk++ + +fF+++ k+y+tg++k+r+++ Sevir.1G314500.1.p 46 LPKGVKFDPSDQELLWHLLAKigKVGVKPHPFIDEfIPTIDsnegLCYIHPQKLP-GVKQDGSVSHFFHRTFKAYSTGTKKRRKINtdelv 135 799************888876334566665543322665554455**********.677888899******************75545666 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+k+v+ +g++ g+kk++v y + + k ekt+Wvmh+y++ Sevir.1G314500.1.p 136 EVRWNKTGKTKPVVI-GGTHLGCKKIMVMYasNIKGGKQEKTNWVMHQYHV 185 899************.999***********5433666777*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-33 | 31 | 204 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.121 | 46 | 204 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-13 | 47 | 185 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MASKIKNASG PTQHTTYTWN SNPTKECPKC NHIIDNSDIV DECPGLPKGV KFDPSDQELL 60 WHLLAKIGKV GVKPHPFIDE FIPTIDSNEG LCYIHPQKLP GVKQDGSVSH FFHRTFKAYS 120 TGTKKRRKIN TDELVEVRWN KTGKTKPVVI GGTHLGCKKI MVMYASNIKG GKQEKTNWVM 180 HQYHVGTGED EKDGEFVVSK LFYQQQPKAV EKNSEGMGEL LEPVYAAVDL AACPPLMDWS 240 ALPFEEGNSN QETVQKSEHN SDQTNSHCEV KDKEDTNHPA SEKVEDQDSH PSEDPKWWEG 300 ESQFLMNSQQ LAECMSICDE FLQSQNSSGS GDEPGKSRPC LAEYAQLPAD DLKKDIEECQ 360 KLADSDNTNM EPECTPEFRL SQLDCFATTW FEGKI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 127 | KKRRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sevir.1G314500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004955196.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
Swissprot | Q6NQK2 | 1e-125 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A368PR05 | 0.0 | A0A368PR05_SETIT; Uncharacterized protein | ||||
STRING | Si019444m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6785 | 36 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-127 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Sevir.1G314500.1.p |