PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G307300.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family CO-like
Protein Properties Length: 408aa    MW: 44637.6 Da    PI: 4.7905
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G307300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.26.1e-07445540
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         C+ +++++  ++C+++   lC +C  + H+       Ht++
  Sevir.1G307300.1.p  4 LCDFCGKQRSMIYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                        7*****************************657888889876 PP
2zf-B_box21.54.9e-074788540
            zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         C++++++++  +C + ++ lC++C  ++H        H+++
  Sevir.1G307300.1.p 47 LCDRCGSQPAAAHCIEENTSLCQNCDWNGHDAtsgatgHKRQ 88
                        7*****************************447778888875 PP
3CCT62.51.3e-21350393144
                 CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                         R+ al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrF k+ 
  Sevir.1G307300.1.p 350 RDSALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFIKAG 393
                         899*************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.7E-10147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.196147IPR000315B-box-type zinc finger
CDDcd000212.82E-6447No hitNo description
PROSITE profilePS501199.1014390IPR000315B-box-type zinc finger
CDDcd000212.00E-54790No hitNo description
SMARTSM003360.0984890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.368350392IPR010402CCT domain
PfamPF062031.1E-16350392IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MAALCDFCGK QRSMIYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CGSQPAAAHC  60
IEENTSLCQN CDWNGHDATS GATGHKRQAI NCYSGCPSSS ELSRIWSFVM DIPTVAAEPN  120
CEDGISMMTI DDSDVTNHCD ASDDKRLLEI ANTTLMSDPP TGDKLKPLIG SPSGDGFNIL  180
PLATDQPAGS DSMTPKVPYA TDDDKFNDGS MYEDLCVDDT DLTFENYEEL FGTSHIQTEQ  240
LFDDAGIDSY FEMKEMPPFD SNEEPKYMQL ECSNVVSADS AMSNQGARAD SSLCIPVRQV  300
RSSISQSFSG LTGESSAGDH QDCGVSPMLL MGEPPWHPPG PEGSVAGGSR DSALTRYKEK  360
KKRRKFDKKI RYASRKARAD VRKRVKGRFI KAGEAYDYDP LSQTRSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359363KKKRR
2359364KKKRRK
3360364KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G307300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353980.0BT035398.1 Zea mays full-length cDNA clone ZM_BFb0059C10 mRNA, complete cds.
GenBankEU9722430.0EU972243.1 Zea mays clone 378354 zinc finger protein CONSTANS-LIKE 11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953745.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE51e-122COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLK3YSX90.0K3YSX9_SETIT; Uncharacterized protein
STRINGSi017374m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.13e-92B-box type zinc finger protein with CCT domain