PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.1G307300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | CO-like | ||||||||
Protein Properties | Length: 408aa MW: 44637.6 Da PI: 4.7905 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.2 | 6.1e-07 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ +++++ ++C+++ lC +C + H+ Ht++ Sevir.1G307300.1.p 4 LCDFCGKQRSMIYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45 7*****************************657888889876 PP | |||||||
2 | zf-B_box | 21.5 | 4.9e-07 | 47 | 88 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C++++++++ +C + ++ lC++C ++H H+++ Sevir.1G307300.1.p 47 LCDRCGSQPAAAHCIEENTSLCQNCDWNGHDAtsgatgHKRQ 88 7*****************************447778888875 PP | |||||||
3 | CCT | 62.5 | 1.3e-21 | 350 | 393 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ al+RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrF k+ Sevir.1G307300.1.p 350 RDSALTRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFIKAG 393 899*************************************9975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.7E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.196 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.82E-6 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.101 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.00E-5 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.098 | 48 | 90 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.368 | 350 | 392 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.1E-16 | 350 | 392 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 408 aa Download sequence Send to blast |
MAALCDFCGK QRSMIYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CGSQPAAAHC 60 IEENTSLCQN CDWNGHDATS GATGHKRQAI NCYSGCPSSS ELSRIWSFVM DIPTVAAEPN 120 CEDGISMMTI DDSDVTNHCD ASDDKRLLEI ANTTLMSDPP TGDKLKPLIG SPSGDGFNIL 180 PLATDQPAGS DSMTPKVPYA TDDDKFNDGS MYEDLCVDDT DLTFENYEEL FGTSHIQTEQ 240 LFDDAGIDSY FEMKEMPPFD SNEEPKYMQL ECSNVVSADS AMSNQGARAD SSLCIPVRQV 300 RSSISQSFSG LTGESSAGDH QDCGVSPMLL MGEPPWHPPG PEGSVAGGSR DSALTRYKEK 360 KKRRKFDKKI RYASRKARAD VRKRVKGRFI KAGEAYDYDP LSQTRSY* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 359 | 363 | KKKRR |
2 | 359 | 364 | KKKRRK |
3 | 360 | 364 | KKRRK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.1G307300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT035398 | 0.0 | BT035398.1 Zea mays full-length cDNA clone ZM_BFb0059C10 mRNA, complete cds. | |||
GenBank | EU972243 | 0.0 | EU972243.1 Zea mays clone 378354 zinc finger protein CONSTANS-LIKE 11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953745.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 | ||||
Swissprot | Q9SSE5 | 1e-122 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | K3YSX9 | 0.0 | K3YSX9_SETIT; Uncharacterized protein | ||||
STRING | Si017374m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2079 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G48250.1 | 3e-92 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.1G307300.1.p |