PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G291400.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family NF-YC
Protein Properties Length: 195aa    MW: 21962.3 Da    PI: 6.1211
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G291400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC171.49.9e-54251291102
               NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                         ql+ fw++q   ie++tdfknh+lPlarikki+kadedv+misae+Pv+++kac +fileltlrsw+h+eenkrrtl+k diaaa+trtdi
  Sevir.1G291400.1.p  25 QLREFWTTQmdeIEQTTDFKNHTLPLARIKKIMKADEDVRMISAEVPVVFAKACKVFILELTLRSWMHTEENKRRTLQKYDIAAAITRTDI 115
                         89******988889***************************************************************************** PP

               NF-YC  89 fdflvdivprdelk 102
                         +dflvdi+prde+k
  Sevir.1G291400.1.p 116 YDFLVDIIPRDEMK 129
                         ***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.41E-3022119IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.6E-3539111IPR009072Histone-fold
PfamPF008082.0E-1947110IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MGVGSQPYPA AAAYAPLTMQ QQQQQLREFW TTQMDEIEQT TDFKNHTLPL ARIKKIMKAD  60
EDVRMISAEV PVVFAKACKV FILELTLRSW MHTEENKRRT LQKYDIAAAI TRTDIYDFLV  120
DIIPRDEMKE EGLGLPRVGL PAAMGPQLII VLIHITMCQH SRYDVWWPAG SPNDVYVAEA  180
ARARGSSLPE SSQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-5532125295NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G291400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0416290.0BT041629.1 Zea mays full-length cDNA clone ZM_BFb0020N05 mRNA, complete cds.
GenBankEU9707120.0EU970712.1 Zea mays clone 349260 nuclear transcription factor Y subunit C-2 mRNA, complete cds.
GenBankJX4284540.0JX428454.1 Zea mays subsp. mays clone pUT3048 CA5P5 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951763.12e-79nuclear transcription factor Y subunit C-4
RefseqXP_004951764.12e-79nuclear transcription factor Y subunit C-4
RefseqXP_004951765.12e-79nuclear transcription factor Y subunit C-4
RefseqXP_004951766.12e-79nuclear transcription factor Y subunit C-4
SwissprotQ655V56e-68NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLA0A368PR991e-115A0A368PR99_SETIT; Uncharacterized protein
STRINGSi018151m8e-79(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.24e-69nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]