PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G274400.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family Dof
Protein Properties Length: 358aa    MW: 36046.9 Da    PI: 8.6626
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G274400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.12.2e-3960121263
              zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                         kekal+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss
  Sevir.1G274400.2.p  60 KEKALNCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 121
                         7899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-2559109IPR003851Zinc finger, Dof-type
PfamPF027012.3E-3362118IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.05964118IPR003851Zinc finger, Dof-type
PROSITE patternPS01361066102IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MEEMLMAGNT NPNQNPNPPP AAPSAAPAAQ RAPGAPAAAP PAPAAAGAGA GTERRARPQK  60
EKALNCPRCN STNTKFCYYN NYSLQQPRYF CKTCRRYWTE GGSLRNVPVG GGSRKNKRSS  120
SAVSSAATAA ASTSAAVSGT IPVGLAAKHP KLMHEGAHDL NLAFPHHNGR GLHPPEFSAF  180
PSLESSSVCN PGATMAGNGA AGRGVGALSA MELLRSTGCY VPLQHVQLGM PAEYAAAGFA  240
LGDFRMPPPP HSQSVLGFSL DTHGTGGVGG AGGYSAGLGV QESAAGRLLF PFEDLKPAVS  300
AAGGANNNGA DQYEHSKDQA GDGSGASGVT TGGHETPGFW SNSIIGNGSS NGGGGPW*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G274400.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC5824100.0KC582410.1 Sorghum bicolor dof16 protein (dof16) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022683328.10.0dof zinc finger protein 2 isoform X2
SwissprotB9F1L81e-124DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBLK3YTM30.0K3YTM3_SETIT; Uncharacterized protein
STRINGSi017619m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.18e-35Dof family protein
Publications ? help Back to Top
  1. Washio K
    Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains.
    Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62
    [PMID:11470159]