PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.1G263700.1.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ERF
Protein Properties Length: 234aa    MW: 24242.7 Da    PI: 4.8161
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.1G263700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.85.7e-1851100255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Sevir.1G263700.1.p  51 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFATAEMAARAHDVAALAIKG 100
                         69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.95851108IPR001471AP2/ERF domain
PfamPF008473.1E-1251100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-3251109IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-2151109IPR016177DNA-binding domain
SMARTSM003803.3E-3751114IPR001471AP2/ERF domain
CDDcd000185.34E-3052110No hitNo description
PRINTSPR003671.4E-105263IPR001471AP2/ERF domain
PRINTSPR003671.4E-107490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MAMEDSSSGS EPTTSSSAEA PASPTATTAS SSSDSSPGKK RRRTKDGHHP TYRGVRMRAW  60
GKWVSEIREP RKKSRIWLGT FATAEMAARA HDVAALAIKG RAAHLNFPEL ASELPRPATA  120
APKDVQAAAA LAAAADFPAP SANAAGGTKD SDDDGPDASP ASASAAASPP QAQDVDSNPD  180
DALFDLPDLL LDLTRHGPSS CQLSCAASWD DDVCFPGAGA GVFRLEEPLL WEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-17491081272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.1G263700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282621e-137KJ728262.1 Zea mays clone pUT6539 AP2-EREBP transcription factor (EREB176) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953342.11e-165ethylene-responsive transcription factor ERF039
SwissprotQ8LBQ73e-53ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A368PPB01e-163A0A368PPB0_SETIT; Uncharacterized protein
TrEMBLK3YUB91e-163K3YUB9_SETIT; Uncharacterized protein
STRINGSi017865m1e-164(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.19e-40ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]